Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22682 | Canola | cytosol | 88.86 | 86.79 |
| Bra031628.1-P | Field mustard | cytosol | 87.8 | 85.75 |
| CDY06315 | Canola | cytosol | 87.27 | 85.23 |
| VIT_06s0080g00210.t01 | Wine grape | nucleus | 66.31 | 71.84 |
| Solyc06g074080.2.1 | Tomato | cytosol | 70.29 | 68.83 |
| PGSC0003DMT400015085 | Potato | cytoskeleton, cytosol, nucleus | 68.44 | 68.07 |
| HORVU1Hr1G074110.1 | Barley | cytosol | 68.97 | 66.84 |
| KRH26679 | Soybean | cytosol | 67.37 | 66.67 |
| EES19606 | Sorghum | cytosol | 68.44 | 66.15 |
| TraesCS1A01G275300.1 | Wheat | cytosol, nucleus, plastid | 68.44 | 65.98 |
| TraesCS1B01G284500.1 | Wheat | cytosol, nucleus, plastid | 68.17 | 65.39 |
| TraesCS1D01G274900.1 | Wheat | cytosol, nucleus, plastid | 62.33 | 64.21 |
| Zm00001d010162_P002 | Maize | cytosol | 53.05 | 35.52 |
| Zm00001d010152_P002 | Maize | cytosol | 53.05 | 35.52 |
| AT4G33470.1 | Thale cress | plastid | 22.81 | 20.33 |
| AT3G18520.2 | Thale cress | cytosol | 30.24 | 20.21 |
| AT3G44680.1 | Thale cress | cytosol | 20.95 | 18.54 |
| AT5G63110.1 | Thale cress | nucleus | 23.08 | 18.47 |
| AT5G35600.1 | Thale cress | cytosol | 19.89 | 18.34 |
| AT4G38130.1 | Thale cress | nucleus | 21.75 | 16.37 |
| AT5G61060.2 | Thale cress | cytosol | 27.59 | 15.66 |
| AT5G61070.1 | Thale cress | cytosol | 27.06 | 14.96 |
| GSMUA_Achr7P09050_001 | Banana | cytosol | 10.88 | 14.59 |
| AT5G26040.2 | Thale cress | endoplasmic reticulum | 14.85 | 14.47 |
| GSMUA_Achr7P09060_001 | Banana | mitochondrion | 1.06 | 7.69 |
| AT3G44490.1 | Thale cress | cytosol | 2.65 | 6.33 |
| AT3G44660.1 | Thale cress | cytoskeleton, cytosol, nucleus | 1.86 | 4.93 |
| Os05t0440100-02 | Rice | cytosol | 1.59 | 2.19 |
Protein Annotations
| MapMan:12.3.2.1.2 | Gene3D:3.40.800.20 | EntrezGene:837366 | ProteinID:AAF22892.1 | ProteinID:AEE28294.1 | EMBL:AF410272 |
| EMBL:AF428369 | EMBL:AF510167 | ArrayExpress:AT1G08460 | EnsemblPlantsGene:AT1G08460 | RefSeq:AT1G08460 | TAIR:AT1G08460 |
| RefSeq:AT1G08460-TAIR-G | EnsemblPlants:AT1G08460.1 | TAIR:AT1G08460.1 | EMBL:AY097371 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004407 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 | GO:GO:0046872 | GO:GO:0070932 | Symbol:HDA08 |
| InterPro:His_deacetylse | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | RefSeq:NP_563817.1 | PFAM:PF00850 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01270 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF121 |
| UniProt:Q94EJ2 | SUPFAM:SSF52768 | UniParc:UPI00000A4C50 | InterPro:Ureohydrolase_dom_sf | SEG:seg | : |
Description
HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
Coordinates
chr1:+:2672198..2674721
Molecular Weight (calculated)
41265.0 Da
IEP (calculated)
5.607
GRAVY (calculated)
-0.144
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.