Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08460.1 | CDY06315 | AT1G08460.1 | 21798944 |
| AT1G08460.1 | CDY22682 | AT1G08460.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031628.1-P | Field mustard | cytosol | 98.19 | 98.19 |
| CDY22682 | Canola | cytosol | 96.11 | 96.11 |
| AT1G08460.1 | Thale cress | cytosol | 85.23 | 87.27 |
| VIT_06s0080g00210.t01 | Wine grape | nucleus | 62.95 | 69.83 |
| Solyc06g074080.2.1 | Tomato | cytosol | 68.65 | 68.83 |
| PGSC0003DMT400015085 | Potato | cytoskeleton, cytosol, nucleus | 67.36 | 68.6 |
| KRH26679 | Soybean | cytosol | 66.06 | 66.93 |
| HORVU1Hr1G074110.1 | Barley | cytosol | 67.1 | 66.58 |
| EES19606 | Sorghum | cytosol | 66.32 | 65.64 |
| TraesCS1A01G275300.1 | Wheat | cytosol, nucleus, plastid | 66.06 | 65.22 |
| TraesCS1B01G284500.1 | Wheat | cytosol, nucleus, plastid | 65.8 | 64.63 |
| TraesCS1D01G274900.1 | Wheat | cytosol, nucleus, plastid | 60.1 | 63.39 |
| Zm00001d010162_P002 | Maize | cytosol | 52.07 | 35.7 |
| Zm00001d010152_P002 | Maize | cytosol | 52.07 | 35.7 |
| CDX82341 | Canola | nucleus | 28.24 | 24.55 |
| CDY24487 | Canola | cytosol, nucleus, peroxisome | 30.31 | 21.51 |
| CDX92243 | Canola | nucleus | 30.05 | 20.35 |
| CDX68980 | Canola | mitochondrion, plastid | 21.5 | 19.53 |
| CDX75356 | Canola | plastid | 21.5 | 19.53 |
| CDY08684 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 19.43 | 18.7 |
| CDX99186 | Canola | cytosol | 20.47 | 18.54 |
| CDY16736 | Canola | nucleus | 22.02 | 18.09 |
| CDY48127 | Canola | nucleus | 22.02 | 18.09 |
| CDY42846 | Canola | nucleus | 24.09 | 17.99 |
| CDY39567 | Canola | cytosol | 17.88 | 17.0 |
| CDY02173 | Canola | nucleus | 28.5 | 16.9 |
| CDY21119 | Canola | nucleus | 21.5 | 16.53 |
| CDY30008 | Canola | nucleus | 21.5 | 16.53 |
| CDY21800 | Canola | cytosol | 17.1 | 16.46 |
| CDY23088 | Canola | nucleus | 27.46 | 16.38 |
| CDY16823 | Canola | peroxisome | 27.46 | 16.31 |
| CDY48157 | Canola | cytosol | 16.84 | 16.29 |
| CDX84385 | Canola | cytosol | 21.24 | 16.24 |
| CDX87200 | Canola | peroxisome | 27.46 | 16.18 |
| CDY48160 | Canola | cytosol | 16.84 | 15.89 |
| CDY39570 | Canola | cytosol | 16.84 | 15.89 |
| CDY47012 | Canola | cytosol | 16.84 | 15.19 |
| CDY52901 | Canola | nucleus | 17.62 | 14.59 |
| CDY41500 | Canola | cytosol | 21.24 | 14.39 |
| GSMUA_Achr7P09050_001 | Banana | cytosol | 10.36 | 14.23 |
| CDX88212 | Canola | cytosol, golgi, nucleus, plastid | 13.73 | 13.35 |
| CDY53952 | Canola | plastid | 8.29 | 13.17 |
| CDX80555 | Canola | cytosol, golgi, nucleus, plastid | 11.4 | 11.76 |
| GSMUA_Achr7P09060_001 | Banana | mitochondrion | 1.04 | 7.69 |
| Os05t0440100-02 | Rice | cytosol | 1.55 | 2.19 |
Protein Annotations
| EnsemblPlants:CDY06315 | EnsemblPlantsGene:GSBRNA2T00122243001 | Gene3D:3.40.800.20 | GO:A0A078EW90 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | InterPro:Ureohydrolase_dom_sf | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF121 | PFAM:PF00850 |
| PRINTS:PR01270 | ProteinID:CDY06315 | ProteinID:CDY06315.1 | SEG:seg | SUPFAM:SSF52768 | UniParc:UPI0004EEC6C6 |
| MapMan:12.3.2.1.2 | : | : | : | : | : |
Description
BnaA09g48880D
Coordinates
chrLK031968:+:761336..763474
Molecular Weight (calculated)
42283.2 Da
IEP (calculated)
5.922
GRAVY (calculated)
-0.234
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSSDQTSKP QSDAVDVFWH EGMLQHDAVQ GVFDTGINPG FLDVLEKHPE NADRVRNMVS ILQRGPISPR VNWLPGRLAI VSELLTFHTS DYINKLIEAD
101: KSGERREISA GTFMSPGSWE AALLAAGTTL SAMQHILDSH SKIAYALVRP PGHHSQLTQA DGYCFLNNAA LAVKLALDSG RCSRVAVVDI DVHYGNGTAE
201: GFYRSDKVLT VSLHMNHGSW GSSHPQRGSV DELGEGLGLG YNLNVPLPNG TGDKGYECAV NELVVPAVRR FGPDMVVLVV GQDSSAFDPN GRQSLTMNGY
301: RRIGQIMREM AEEHSNGRLL MVQEGGYHVT YAAYCLHAML EGVLKIPEPH LEDPVAYYPE DEAVAVEAVK SIKRYHSEYV PFLRGT
101: KSGERREISA GTFMSPGSWE AALLAAGTTL SAMQHILDSH SKIAYALVRP PGHHSQLTQA DGYCFLNNAA LAVKLALDSG RCSRVAVVDI DVHYGNGTAE
201: GFYRSDKVLT VSLHMNHGSW GSSHPQRGSV DELGEGLGLG YNLNVPLPNG TGDKGYECAV NELVVPAVRR FGPDMVVLVV GQDSSAFDPN GRQSLTMNGY
301: RRIGQIMREM AEEHSNGRLL MVQEGGYHVT YAAYCLHAML EGVLKIPEPH LEDPVAYYPE DEAVAVEAVK SIKRYHSEYV PFLRGT
001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
Arabidopsis Description
HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.