CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42846	Canola	nucleus	81.78	67.7
CDY23088	Canola	nucleus	49.77	32.92
CDY02173	Canola	nucleus	49.77	32.72
TraesCS1B01G329500.1	Wheat	cytosol	28.97	31.79
TraesCS1A01G317100.1	Wheat	mitochondrion	29.44	31.74
TraesCS1D01G317100.1	Wheat	mitochondrion	29.21	31.73
CDY16823	Canola	peroxisome	47.66	31.38
CDX87200	Canola	peroxisome	47.66	31.14
KRH56821	Soybean	nucleus	46.96	30.64
AT5G61070.1	Thale cress	cytosol	48.13	30.21
KRH03123	Soybean	cytosol	45.09	29.42
VIT_17s0000g07280.t01	Wine grape	cytosol	44.39	29.41
HORVU1Hr1G066760.1	Barley	plastid	29.67	29.0
GSMUA_Achr4P03250_001	Banana	cytosol	42.06	27.11
Solyc03g115150.2.1	Tomato	cytosol	39.49	26.12
Zm00001d006780_P011	Maize	cytosol	41.59	25.28
Os07t0602200-01	Rice	cytosol, nucleus, plastid	40.89	25.18
EER97493	Sorghum	plastid	41.36	25.18
TraesCS2D01G185200.1	Wheat	cytosol, golgi	40.42	24.96
TraesCS2A01G177100.1	Wheat	cytosol	40.42	24.96
TraesCS2B01G204100.1	Wheat	cytosol	40.42	24.96
HORVU2Hr1G032540.2	Barley	plastid	40.65	23.74
CDX82341	Canola	nucleus	23.13	22.3
CDY24487	Canola	cytosol, nucleus, peroxisome	24.3	19.12
CDX92243	Canola	nucleus	23.6	17.72
CDY22682	Canola	cytosol	15.65	17.36
CDY06315	Canola	cytosol	15.19	16.84
CDY52901	Canola	nucleus	16.82	15.45
CDX75356	Canola	plastid	15.19	15.29
CDX68980	Canola	mitochondrion, plastid	14.95	15.06
CDY30008	Canola	nucleus	17.52	14.94
CDY21119	Canola	nucleus	17.52	14.94
CDX99186	Canola	cytosol	12.62	12.68
CDY48127	Canola	nucleus	13.32	12.13
CDY16736	Canola	nucleus	13.32	12.13
CDY48160	Canola	cytosol	11.21	11.74
CDX84385	Canola	cytosol	13.79	11.68
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	10.75	11.47
CDY39570	Canola	cytosol	10.75	11.25
CDY39567	Canola	cytosol	10.51	11.08
CDY21800	Canola	cytosol	10.28	10.97
CDY48157	Canola	cytosol	9.81	10.53
CDY41500	Canola	cytosol	13.79	10.35
CDX88212	Canola	cytosol, golgi, nucleus, plastid	8.88	9.57
CDX80555	Canola	cytosol, golgi, nucleus, plastid	7.48	8.56
CDY53952	Canola	plastid	3.74	6.58

Protein Annotations

Gene3D:3.40.800.20	MapMan:35.1	GO:A0A078IA61	UniProt:A0A078IA61	EnsemblPlants:CDY47012	ProteinID:CDY47012
ProteinID:CDY47012.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0070932	EnsemblPlantsGene:GSBRNA2T00086523001	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
PFAM:PF00850	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	SUPFAM:SSF52768	UniParc:UPI0004EED8A5	InterPro:Ureohydrolase_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaC02g41970DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078IA61]

Coordinates

chrLK032694:-:97983..100886

Molecular Weight (calculated)

48404.3 Da

IEP (calculated)

8.066

GRAVY (calculated)

-0.534

Length

428 amino acids

Sequence
(BLAST)

001: MAGESRKRKV GLLYDERMCK HDTPDGEDHP ECPNRIKAIW AKLQLTGLAQ RCAVLGGSKA EDKHLQLVHT KEHVNLVKRL STKKKDSRRN KIASKLDSVY
101: LNGGSSEAAY LAAGSVVEVA EKVAEGELDR GFAIVRPPGH HAEADEAMGP DLGVKKILIV DWDCSLFIGM MMEASIQREM MEIWEGFNIN VPWEQGRRSG
201: FDAAVGDPRG GCFVTPYGYS VMLKKLRKDC DGIRGRVQSW VSCKVLLEEK QIEDSFEEYP YEYARGYAHT GLHLQMSYRG RQKLLVQLST LEVALEEKAA
301: LQTKVAELQG EKLRLQDKYA AVAKEAAEQL THVSSELREA KIDLDFQREL FKKASEEKKL LEGRVLKLEA ELQKEASDKL RLRISRDRYA AEVKEAAEQL
401: AKVRSELREV QIDLNLHREL LKKATEVK

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.