CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03123	Soybean	cytosol	91.46	91.46
VIT_17s0000g07280.t01	Wine grape	cytosol	67.99	69.04
Bra012984.1-P	Field mustard	nucleus	63.41	64.3
CDY23088	Canola	nucleus	63.26	64.14
CDY02173	Canola	nucleus	62.96	63.44
Bra035942.1-P	Field mustard	peroxisome	61.28	61.85
AT5G61060.2	Thale cress	cytosol	62.5	61.75
CDY16823	Canola	peroxisome	61.13	61.69
CDX87200	Canola	peroxisome	61.28	61.37
GSMUA_Achr4P03250_001	Banana	cytosol	60.52	59.79
TraesCS1A01G317100.1	Wheat	mitochondrion	35.52	58.69
Solyc03g115150.2.1	Tomato	cytosol	57.47	58.27
TraesCS1B01G329500.1	Wheat	cytosol	34.6	58.21
TraesCS1D01G317100.1	Wheat	mitochondrion	34.3	57.11
Bra029339.1-P	Field mustard	cytosol	40.85	55.72
EER97493	Sorghum	plastid	58.54	54.62
Os07t0602200-01	Rice	cytosol, nucleus, plastid	57.62	54.39
Zm00001d006780_P011	Maize	cytosol	57.32	53.41
HORVU1Hr1G066760.1	Barley	plastid	35.21	52.74
TraesCS2A01G177100.1	Wheat	cytosol	55.34	52.38
CDY42846	Canola	nucleus	41.16	52.22
TraesCS2B01G204100.1	Wheat	cytosol	55.03	52.09
TraesCS2D01G185200.1	Wheat	cytosol, golgi	54.88	51.95
HORVU2Hr1G032540.2	Barley	plastid	55.79	49.93
CDY47012	Canola	cytosol	30.64	46.96
AT5G61070.1	Thale cress	cytosol	44.36	42.67
KRH56687	Soybean	nucleus	23.48	36.93
KRH59585	Soybean	plastid	18.45	28.81
KRH03799	Soybean	nucleus	23.63	28.55
KRH26679	Soybean	cytosol	15.85	27.3
KRH54336	Soybean	cytosol, nucleus, plastid	5.64	23.12
KRH27562	Soybean	nucleus	16.46	21.73
KRH25183	Soybean	cytosol	14.18	21.68
KRH63609	Soybean	cytosol	15.24	21.51
KRH30495	Soybean	cytosol	14.02	21.45
KRH77972	Soybean	nucleus	16.01	21.13
KRH03236	Soybean	nucleus	14.94	20.76
KRH60609	Soybean	nucleus	15.7	20.72
KRH57122	Soybean	nucleus	14.94	20.59
KRH05486	Soybean	cytosol	10.82	20.4
KRH51318	Soybean	nucleus	15.4	20.32
KRH54335	Soybean	cytosol, nucleus, plastid	6.86	19.23
KRH63610	Soybean	cytosol	5.18	17.26
KRH16462	Soybean	nucleus	1.37	11.54

Protein Annotations

EntrezGene:100788831	MapMan:12.3.2.1.2	Gene3D:3.10.490.10	Gene3D:3.40.800.20	EMBL:ACUP02002798	EnsemblPlantsGene:GLYMA_05G021400
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0030312
GO:GO:0032041	GO:GO:0070932	GO:GO:0071555	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
UniProt:I1JZJ1	InterPro:IPR037138	EnsemblPlants:KRH56821	ProteinID:KRH56821	ProteinID:KRH56821.1	PFAM:PF00850
PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	SUPFAM:SSF52768	UniParc:UPI000233A0EB	InterPro:Ureohydrolase_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:1890928..1897433

Molecular Weight (calculated)

73050.7 Da

IEP (calculated)

5.106

GRAVY (calculated)

-0.210

Length

656 amino acids

Sequence
(BLAST)

001: MERENDNSAK SSVNGQRRVG LLYDERMCKH HTPDDEDHPE TPNRIRAIWN KLQSTGVPQR CVILEAKEAE DKHLLLVHSE NHVNLIKNIS SKQFNSRRHK
101: IASKLDSIYF NEGSSEAAYL AAGSAVEVVE RVASRELDSA VAIVRPPGHH AEQNEAMGFC LFNNVAVAAR YLLDERPELG VKKILIVDWD VHHGNGTQKM
201: FWNDSRVLFF SVHRHEFGSF YPANDDGFYT MIGEGAGAGY NINVPWENGR CGDADYFAVW DHILLPVAKE FNPDIIIVSA GFDAAVGDPL GGCRVTPFGY
301: SVLLEKLMNF AEGRIVLILE GGYNLDSIAK SMHACLEVLL EDKPVIGSSE AYPFESTWRV IKAVLLELSP FWPTLACELP QKLISQMAPP PHTLVSSSDS
401: EAEDDKGAPS SENFVELLED VIKPLSKLKV DADEDTDVSS TWRSELSNVY IWYASYGSNM WKARLNCYLA GGQVEGMQKG CSGSVNRTLP KEILWKTFPC
501: HIFFGRDSSH SWGMGGVAFL NPEKSFQHNT YMCLYKISLE QFNDILFQEN GLSLDAGSPL FDITTLNAIS YKEFHSLEVV KGAWYGNVVY LGKELDIPVI
601: TMTCSLLDIE RFKSGKLPLR APNKAYANTL IKGLVDGEQL SEVEAIAYIE GAAKSL

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.