CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96377
KRG97777
KRH14993
KRH31107
KRH31921
KRH68108
KRH71533
KRH73146

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	KRG97777	AT2G39940.1	12445118
AT5G63110.1	KRH14993	AT2G39940.1	12445118
AT5G63110.1	KRH31107	AT2G39940.1	12445118
AT5G63110.1	KRH73146	AT2G39940.1	12445118
AT5G63110.1	KRG96377	AT3G62980.1	12445118
AT5G63110.1	KRH31921	AT3G62980.1	12445118
AT5G63110.1	KRH68108	AT3G62980.1	12445118
AT5G63110.1	KRH71533	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P06520_001	Banana	cytosol	76.88	33.79
GSMUA_AchrUn_...	Banana	mitochondrion	74.38	32.87
KRH63609	Soybean	cytosol	89.38	30.75
VIT_17s0000g09070.t01	Wine grape	cytosol	81.88	28.23
KRH03236	Soybean	nucleus	80.62	27.33
KRH57122	Soybean	nucleus	80.62	27.1
Bra035858.1-P	Field mustard	nucleus	78.12	26.6
CDY16736	Canola	nucleus	78.12	26.6
CDY48127	Canola	nucleus	77.5	26.38
PGSC0003DMT400069419	Potato	nucleus	77.5	26.33
Solyc06g071680.2.1	Tomato	cytosol	76.88	26.11
AT5G63110.1	Thale cress	nucleus	76.88	26.11
PGSC0003DMT400046818	Potato	cytosol	74.38	26.1
Solyc03g112410.1.1	Tomato	cytosol	73.12	26.06
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	73.75	25.76
HORVU6Hr1G038010.6	Barley	cytosol	73.12	25.49
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	72.5	25.33
TraesCS6D01G168400.1	Wheat	cytosol	71.88	25.11
TraesCS6B01G210200.1	Wheat	cytosol	71.88	25.11
TraesCS6A01G181100.1	Wheat	cytosol	71.88	25.11
CDX84385	Canola	cytosol	76.25	24.16
Zm00001d050139_P001	Maize	nucleus	73.75	24.03
KRH27562	Soybean	nucleus	66.88	21.53
CDY41500	Canola	cytosol	76.25	21.4
KRH77972	Soybean	nucleus	65.62	21.13
KRH60609	Soybean	nucleus	65.62	21.13
Bra038607.1-P	Field mustard	cytosol	75.0	21.05
KRH51318	Soybean	nucleus	65.0	20.93
KRH30495	Soybean	cytosol	55.0	20.51
KRH25183	Soybean	cytosol	55.0	20.51
KRH16462	Soybean	nucleus	6.88	14.1
KRH26679	Soybean	cytosol	23.12	9.71
KRH56687	Soybean	nucleus	22.5	8.63
KRH05486	Soybean	cytosol	16.25	7.47
KRH59585	Soybean	plastid	19.38	7.38
KRH03799	Soybean	nucleus	23.75	7.0
KRH56821	Soybean	nucleus	23.12	5.64
KRH03123	Soybean	cytosol	22.5	5.49
KRH54335	Soybean	cytosol, nucleus, plastid	7.5	5.13
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	3.75	3.06
KRH63610	Soybean	cytosol	1.88	1.52

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	UniProt:A0A0R0JIQ9	EMBL:ACUP02003514	EnsemblPlantsGene:GLYMA_06G178800	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	InterPro:His_deacetylse	InterPro:His_deacetylse_1
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EnsemblPlants:KRH54336	ProteinID:KRH54336	ProteinID:KRH54336.1
PFAM:PF00850	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	UniParc:UPI0006EDC75C
InterPro:Ureohydrolase_dom_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:15165688..15169881

Molecular Weight (calculated)

17763.1 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.078

Length

160 amino acids

Sequence
(BLAST)

001: MTVSFHKFRD FFPGTGHSKD IGVGAGKNYS LNVPLNDGLD DETFCGLFRP IIQKVMDIYQ PDAVVLQCGA DSLSGDQLGC FNLTVKGHAD CLRFLRSFSV
101: PLMVLGGGGY TVQNVARCWT YETAVAVGVE PSPKLPYNEY YEYFGPDYII FTSSYPQWKT

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.