CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92429
KRG92430
KRH03236
KRH28611
KRH34375
KRH34377
KRH54335
KRH54336
KRH57122
KRH63609
KRH69048
KRH76867

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	KRG92429	AT1G04250.1	11713520
AT3G62980.1	KRH34377	AT1G04250.1	11713520
AT3G62980.1	KRG92429	AT3G23050.1	11713520
AT3G62980.1	KRH34377	AT3G23050.1	11713520
AT3G62980.1	KRG92430	AT4G14560.1	15546359
AT3G62980.1	KRH34375	AT4G14560.1	15546359
AT3G62980.1	KRH69048	AT4G14560.1	15546359
AT3G62980.1	KRH28611	AT4G36800.1	12682009
AT3G62980.1	KRH76867	AT4G36800.1	12682009
AT3G62980.1	KRH03236	AT5G63110.1	12445118
AT3G62980.1	KRH54335	AT5G63110.1	12445118
AT3G62980.1	KRH54336	AT5G63110.1	12445118
AT3G62980.1	KRH57122	AT5G63110.1	12445118
AT3G62980.1	KRH63609	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96377	Soybean	cytosol	96.93	96.76
KRH71533	Soybean	cytosol	84.47	84.62
KRH31921	Soybean	cytosol	83.62	83.76
VIT_07s0104g01320.t01	Wine grape	cytosol	81.74	83.16
Solyc06g008440.1.1	Tomato	extracellular	8.87	81.25
PGSC0003DMT400029517	Potato	cytosol	79.01	79.69
Solyc09g074520.2.1	Tomato	cytosol	78.84	79.52
CDY68868	Canola	cytosol	71.5	77.59
AT3G62980.1	Thale cress	cytosol	78.5	77.44
CDY11468	Canola	cytosol	78.33	77.14
CDY53998	Canola	cytosol	76.62	76.88
Bra007720.1-P	Field mustard	cytosol	77.99	76.81
CDX76680	Canola	cytosol	77.99	76.81
PGSC0003DMT400061752	Potato	plastid	74.74	75.52
Solyc06g008470.1.1	Tomato	extracellular	7.34	75.44
Bra003518.1-P	Field mustard	cytosol	76.28	75.25
PGSC0003DMT400053430	Potato	cytosol	33.96	73.98
PGSC0003DMT400056570	Potato	cytosol	73.38	72.39
PGSC0003DMT400093216	Potato	mitochondrion	18.77	71.9
Solyc06g008810.2.1	Tomato	cytosol	50.85	70.78
GSMUA_Achr5P26930_001	Banana	cytosol	55.29	69.83
CDX67912	Canola	endoplasmic reticulum, golgi	76.45	69.46
Solyc06g008460.1.1	Tomato	extracellular	27.99	69.2
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	16.21	67.86
GSMUA_Achr3P23850_001	Banana	cytosol	66.21	66.67
Bra014378.1-P	Field mustard	cytosol	70.82	66.29
CDX89163	Canola	cytosol	70.65	66.13
PGSC0003DMT400008765	Potato	cytosol	11.43	62.62
KRG94665	Soybean	cytosol	59.56	61.01
KRH06858	Soybean	cytosol	59.56	61.01
Os05t0150500-00	Rice	plastid	60.58	60.48
KXG21312	Sorghum	plastid	60.75	60.24
Zm00001d010863_P001	Maize	plastid	60.41	60.0
TraesCS1A01G091300.1	Wheat	cytosol	60.58	59.97
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	60.24	59.93
KRH70053	Soybean	cytosol	58.53	59.86
Solyc06g008780.1.1	Tomato	extracellular	50.17	59.27
TraesCS1D01G099900.1	Wheat	cytosol	60.58	59.17
KRH08397	Soybean	cytosol	56.14	57.42
Solyc05g009260.1.1	Tomato	extracellular	7.85	56.79
HORVU1Hr1G021550.4	Barley	cytosol	59.56	54.36
KRH49941	Soybean	cytosol	52.22	52.94
KRH41935	Soybean	cytosol	52.22	52.85
Solyc06g007840.2.1	Tomato	extracellular, plastid	7.0	50.0
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	9.56	49.12
KRH52925	Soybean	cytosol	49.15	49.06
KRH62206	Soybean	cytosol	48.63	48.89
KRH72427	Soybean	cytosol	48.98	45.56
KRH16819	Soybean	cytosol	49.15	45.0
Solyc06g084490.1.1	Tomato	plastid	14.51	40.48
KRH73146	Soybean	cytosol	32.42	32.53
KRH14993	Soybean	cytosol	31.06	32.04
KRG97777	Soybean	cytosol	32.25	32.03
KRH31107	Soybean	cytosol	32.25	32.03

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100816241	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EMBL:ACUP02002102
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_03G209400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
UniProt:I1JQG9	InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH68108	ProteinID:KRH68108	ProteinID:KRH68108.1
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00023C17AB	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:41624056..41627862

Molecular Weight (calculated)

66291.5 Da

IEP (calculated)

6.324

GRAVY (calculated)

-0.018

Length

586 amino acids

Sequence
(BLAST)

001: MQKMAYTFSF PEEVLEHVFS FIWSERDRNA ISLVCKSWYE IERWCRRKVF VGNCYAVSPL MVIKRFPELR SIALKGKPHF ADFNLVPEGW GGYVCPWIAA
101: MARAFPCLEE IRLKRMVITD ESLELIAKSF KNFKVLVLTS CEGFTADGLT AIASNCRNLR ELDLQESEVE DLSGHWLSHF PDSYTSLVSL NISCLNHEVS
201: LSALERLLGR CRNLRTLRLN RAVPLDRLPN LLLRCPQLVE LGTGVYSTEM RPEVFSNLEA AFSGCKQLKS LSGFWDVLPS YLPAVYPICS RLTSLNLSYA
301: IIQSSDLIKL ISQCPNLLRL WVLDYIEDAG LYALAASCKD LRELRVFPSE PFGLEPNVSL TEQGLVSVSE GCPKLQSVLY FCRQMSNAAL HTIARNRPNL
401: TRFRLCIIEP RTPDYLTLEP LDSGFGAIVE QCKDLQRLSL SGLLTDRVFE YIGTYAKKLE MLSVAFAGDS DLGLHHVLSG CDNLRKLEIR DCPFGDKALL
501: ANAEKLETMR SLWMSSCSVS YGACKLLGQK MPRLNVEVID ERGPPDSRPD DCPVEKLYIY RTVAGPRLDM PGFVWTMEDD SSLRLE

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.