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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P06520_001
GSMUA_Achr2P12630_001
GSMUA_Achr2P23180_001
GSMUA_Achr3P13610_001
GSMUA_Achr3P16300_001
GSMUA_Achr4P05200_001
GSMUA_Achr4P21020_001
GSMUA_Achr4P21030_001
GSMUA_Achr4P22520_001
GSMUA_Achr4P22530_001
GSMUA_Achr5P03110_001
GSMUA_Achr5P09310_001
GSMUA_Achr6P08850_001
GSMUA_Achr7P13680_001
GSMUA_Achr8P20610_001
GSMUA_Achr8P20620_001
GSMUA_Achr9P10690_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P17620_001
GSMUA_Achr9P24330_001
GSMUA_Achr9P25550_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G62980.1 GSMUA_Achr10P... AT1G04250.1 11713520
AT3G62980.1 GSMUA_Achr4P21020_001 AT1G04250.1 11713520
AT3G62980.1 GSMUA_Achr4P22520_001 AT1G04250.1 11713520
AT3G62980.1 GSMUA_Achr8P20610_001 AT1G04250.1 11713520
AT3G62980.1 GSMUA_Achr9P10700_001 AT1G04250.1 11713520
AT3G62980.1 GSMUA_Achr9P25550_001 AT1G04250.1 11713520
AT3G62980.1 GSMUA_Achr10P... AT3G23050.1 11713520
AT3G62980.1 GSMUA_Achr4P21020_001 AT3G23050.1 11713520
AT3G62980.1 GSMUA_Achr4P22520_001 AT3G23050.1 11713520
AT3G62980.1 GSMUA_Achr8P20610_001 AT3G23050.1 11713520
AT3G62980.1 GSMUA_Achr9P10700_001 AT3G23050.1 11713520
AT3G62980.1 GSMUA_Achr9P25550_001 AT3G23050.1 11713520
AT3G62980.1 GSMUA_Achr11P... AT4G14560.1 15546359
AT3G62980.1 GSMUA_Achr2P12630_001 AT4G14560.1 15546359
AT3G62980.1 GSMUA_Achr4P05200_001 AT4G14560.1 15546359
AT3G62980.1 GSMUA_Achr4P21030_001 AT4G14560.1 15546359
AT3G62980.1 GSMUA_Achr4P22530_001 AT4G14560.1 15546359
AT3G62980.1 GSMUA_Achr5P03110_001 AT4G14560.1 15546359
AT3G62980.1 GSMUA_Achr8P20620_001 AT4G14560.1 15546359
AT3G62980.1 GSMUA_Achr9P10690_001 AT4G14560.1 15546359
AT3G62980.1 GSMUA_Achr9P24330_001 AT4G14560.1 15546359
AT3G62980.1 GSMUA_Achr2P23180_001 AT4G36800.1 12682009
AT3G62980.1 GSMUA_Achr3P13610_001 AT4G36800.1 12682009
AT3G62980.1 GSMUA_Achr6P08850_001 AT4G36800.1 12682009
AT3G62980.1 GSMUA_Achr2P06520_001 AT5G63110.1 12445118
AT3G62980.1 GSMUA_AchrUn_... AT5G63110.1 12445118
AT4G03190.1 GSMUA_Achr10P... AT3G23050.1 15992545
AT4G03190.1 GSMUA_Achr4P21020_001 AT3G23050.1 15992545
AT4G03190.1 GSMUA_Achr4P22520_001 AT3G23050.1 15992545
AT4G03190.1 GSMUA_Achr8P20610_001 AT3G23050.1 15992545
AT4G03190.1 GSMUA_Achr9P10700_001 AT3G23050.1 15992545
AT4G03190.1 GSMUA_Achr9P25550_001 AT3G23050.1 15992545
AT4G03190.1 GSMUA_Achr9P17620_001 AT4G02570.1 15992545
AT4G03190.1 GSMUA_Achr3P16300_001 AT5G25890.1 21734647
AT4G03190.1 GSMUA_Achr5P09310_001 AT5G25890.1 21734647
AT4G03190.1 GSMUA_Achr7P13680_001 AT5G25890.1 21734647
AT4G03190.1 GSMUA_AchrUn_... AT5G25890.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr5P26930_001 Banana cytosol 68.73 86.21
Os05t0150500-00 Rice plastid 71.48 70.87
KXG21312 Sorghum plastid 71.82 70.73
Zm00001d010863_P001 Maize plastid 71.65 70.68
TraesCS1B01G119100.1 Wheat cytosol, peroxisome, plastid 70.62 69.78
TraesCS1A01G091300.1 Wheat cytosol 70.62 69.43
Solyc06g008470.1.1 Tomato extracellular 6.7 68.42
TraesCS1D01G099900.1 Wheat cytosol 70.45 68.33
VIT_07s0104g01320.t01 Wine grape cytosol 67.53 68.23
KRG96377 Soybean cytosol 67.01 66.44
PGSC0003DMT400029517 Potato cytosol 66.15 66.27
KRH68108 Soybean cytosol 66.67 66.21
Solyc09g074520.2.1 Tomato cytosol 65.29 65.4
KRH71533 Soybean cytosol 65.46 65.13
KRH31921 Soybean cytosol 65.29 64.96
GSMUA_Achr10P... Banana cytosol 59.11 64.54
VIT_14s0030g01240.t01 Wine grape cytosol 64.26 64.37
GSMUA_AchrUn_... Banana cytosol 58.93 64.35
Solyc06g008440.1.1 Tomato extracellular 7.04 64.06
PGSC0003DMT400093216 Potato mitochondrion 16.84 64.05
GSMUA_Achr6P08000_001 Banana cytosol 58.42 63.79
CDY68868 Canola cytosol 59.11 63.7
PGSC0003DMT400053430 Potato cytosol 29.38 63.57
VIT_12s0035g00130.t01 Wine grape cytosol, extracellular, nucleus 15.98 63.27
HORVU1Hr1G021550.4 Barley cytosol 69.59 63.08
CDY53998 Canola cytosol 63.23 63.01
PGSC0003DMT400061752 Potato plastid 62.71 62.93
CDY11468 Canola cytosol 64.09 62.69
Bra007720.1-P Field mustard cytosol 63.92 62.52
CDX76680 Canola cytosol 63.75 62.35
AT3G62980.1 Thale cress cytosol 63.57 62.29
GSMUA_Achr6P16510_001 Banana cytosol 56.87 62.1
Bra003518.1-P Field mustard cytosol 63.06 61.78
GSMUA_Achr9P01140_001 Banana cytosol 56.53 61.73
PGSC0003DMT400056570 Potato cytosol 62.71 61.45
AT4G03190.1 Thale cress cytosol, plastid 61.17 60.85
PGSC0003DMT400013682 Potato cytosol, mitochondrion 14.6 60.71
Bra034191.1-P Field mustard cytosol 60.65 60.34
CDY53774 Canola cytosol 60.48 60.07
Bra000842.1-P Field mustard cytosol 59.97 59.56
CDX90899 Canola cytosol 59.97 59.56
Solyc06g008460.1.1 Tomato extracellular 24.05 59.07
GSMUA_Achr6P20580_001 Banana cytosol 50.34 58.6
Solyc06g008810.2.1 Tomato cytosol 42.27 58.43
CDX67912 Canola endoplasmic reticulum, golgi 63.06 56.9
CDY21947 Canola plastid, vacuole 60.48 56.23
CDY22108 Canola endoplasmic reticulum, golgi, plastid, vacuole 60.65 55.24
PGSC0003DMT400008765 Potato cytosol 9.97 54.21
Bra014378.1-P Field mustard cytosol 57.39 53.35
CDX89163 Canola cytosol 57.39 53.35
Solyc05g009260.1.1 Tomato extracellular 7.22 51.85
Solyc06g008780.1.1 Tomato extracellular 42.61 50.0
Solyc06g007840.2.1 Tomato extracellular, plastid 6.87 48.78
GSMUA_Achr3P06710_001 Banana cytosol 45.19 45.9
Solyc06g007830.1.1 Tomato endoplasmic reticulum, extracellular 8.76 44.74
GSMUA_Achr5P05520_001 Banana cytosol 45.02 44.63
GSMUA_Achr7P11780_001 Banana cytosol 44.5 43.9
Solyc06g084490.1.1 Tomato plastid 12.37 34.29
GSMUA_Achr8P02350_001 Banana cytosol 9.79 33.14
GSMUA_Achr5P28930_001 Banana cytosol 29.21 30.36
GSMUA_Achr6P33630_001 Banana cytosol, mitochondrion, nucleus 29.21 29.16
GSMUA_Achr9P03690_001 Banana cytosol 29.38 28.36
Protein Annotations
Gene3D:1.20.1280.50MapMan:11.2.2.1.1MapMan:19.2.2.8.1.4.6Gene3D:3.80.10.10InterPro:F-box-like_dom_sfInterPro:F-box_dom
GO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSMUA_Achr3G23850_001EnsemblPlants:GSMUA_Achr3P23850_001EnsemblPlants:GSMUA_Achr3T23850_001
InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rpt_Cys-con_subtypUniProt:M0SHA1PFAM:PF12937
PANTHER:PTHR43944PANTHER:PTHR43944:SF7SMART:SM00256SMART:SM00367SUPFAM:SSF52047SUPFAM:SSF81383
UniParc:UPI000295DD86:::::
Description
Transport inhibitor response 1-like protein Os05g0150500 [Source:GMGC_GENE;Acc:GSMUA_Achr3G23850_001]
Coordinates
chr3:+:24563599..24569474
Molecular Weight (calculated)
64708.8 Da
IEP (calculated)
7.231
GRAVY (calculated)
0.103
Length
582 amino acids
Sequence
(BLAST)
001: MVGGFRWAAM FPDEVWEHVF SFLPADADRN AAALVCRAWY RIERRSRWRV FVGNCYAVEP AAAVRRFPEV RAAAIKGKPH FADFNLVPSD WGGGAEAWVE
101: AMVEGWPHLE ELRLKRMVVS DDCLELIARC FKNFKVLSLV SCEGFSTAGL AAIAANCRNL RELDLHENEV EDNCLHWMSH FPESFASLVT LNIACLEGEV
201: NVSVLERLIG RCPNLKTLRL NHSVPLERLV GLLHRVPQLV DLGTGKFAAQ HHPELFSKLE SAIAGCKNLK SLSGFWEAGP TYLPAIYSVC EGLTSLNLSY
301: ATIQGPELIK LISWCKNLQR LWVMDLIEDD GLIAVAASCK LLQELRVFPS DPYGAAQPIS LTEHGLVAIS AGCPMLHSVL YFCRQMTNAA LLTVAKNCPN
401: FTCFRLCIME PHTPDYITRQ PLDAGFSAIV ESCKHLRRLS LSGLLTDLVF KSIGASANCL EMLSVAFAGD GDAGLHYILS GCKNLRKLEI RDCPFGDKPL
501: LDNAAKLETM RSLWMSSCSV TLGACRQLAR KMPLLNVEVI NERKRGLPLE LQPDNCPVEK LYIYRTVAGP RSDTPSCVWI LR
Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)
001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
Arabidopsis Description
TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.