Factsheet for GSMUA_AchrUn_randomP10710_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P21020_001
GSMUA_Achr4P22520_001
GSMUA_Achr8P20610_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P17620_001
GSMUA_Achr9P25550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P17620_001	AT4G02570.1	15992545
AT3G26810.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08000_001	Banana	cytosol	88.93	88.93
GSMUA_Achr6P16510_001	Banana	cytosol	88.18	88.18
GSMUA_Achr10P...	Banana	cytosol	88.18	88.18
GSMUA_Achr9P01140_001	Banana	cytosol	83.11	83.11
GSMUA_Achr6P20580_001	Banana	cytosol	72.98	77.8
HORVU6Hr1G021040.2	Barley	extracellular	18.39	70.0
VIT_14s0068g01330.t01	Wine grape	cytosol	74.67	69.58
Os04t0395600-01	Rice	cytosol	74.67	69.22
HORVU2Hr1G070800.1	Barley	cytosol	73.73	68.47
TraesCS2D01G285000.1	Wheat	cytosol	73.36	68.12
Zm00001d003911_P003	Maize	cytosol	73.36	68.0
TraesCS2A01G286200.1	Wheat	cytosol	73.17	67.94
KRG94665	Soybean	cytosol	72.8	67.83
TraesCS2B01G302900.1	Wheat	cytosol	72.98	67.77
KRH06858	Soybean	cytosol	72.23	67.31
KXG26136	Sorghum	cytosol	74.67	67.12
Zm00001d025268_P001	Maize	cytosol	72.05	67.02
AT3G26810.1	Thale cress	cytosol	71.86	66.61
Bra032954.1-P	Field mustard	cytosol	71.86	66.61
CDY28523	Canola	cytosol	71.67	66.43
CDY34211	Canola	cytosol	71.67	66.43
KRH70053	Soybean	cytosol	70.54	65.62
AT1G12820.1	Thale cress	cytosol	69.98	64.64
KRH08397	Soybean	cytosol	67.92	63.18
GSMUA_Achr5P26930_001	Banana	cytosol	54.78	62.93
Bra026953.1-P	Field mustard	cytosol	68.11	62.8
CDX71968	Canola	cytosol	68.11	62.8
CDY31282	Canola	cytosol	68.67	62.35
CDY16034	Canola	cytosol	67.73	62.35
CDY26594	Canola	cytosol	67.54	62.28
Bra016754.1-P	Field mustard	cytosol	68.29	61.69
CDY21068	Canola	cytosol	67.92	61.36
HORVU5Hr1G075620.2	Barley	cytosol	64.73	60.74
TraesCS5A01G281100.1	Wheat	cytosol	64.73	60.63
TraesCS5D01G288000.1	Wheat	cytosol	64.73	60.63
Os11t0515500-01	Rice	cytosol	64.54	60.56
TraesCS5B01G280100.1	Wheat	cytosol	64.73	60.31
GSMUA_Achr3P23850_001	Banana	cytosol	64.35	58.93
EES09791	Sorghum	cytosol	63.41	58.48
Zm00001d007357_P005	Maize	cytosol	61.16	56.89
GSMUA_Achr3P06710_001	Banana	cytosol	50.84	47.29
GSMUA_Achr5P05520_001	Banana	cytosol	51.22	46.51
GSMUA_Achr7P11780_001	Banana	cytosol	51.03	46.1
GSMUA_Achr5P28930_001	Banana	cytosol	30.39	28.93
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	30.96	28.3
GSMUA_Achr9P03690_001	Banana	cytosol	31.71	28.03
GSMUA_Achr8P02350_001	Banana	cytosol	8.44	26.16

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP10710_001	EnsemblPlants:GSMUA_AchrUn_randomT10710_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG10710_001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF5	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI00029689DC	UniProt:M0U830	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:	:

Description

Transport inhibitor response 1-like protein Os04g0395600 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG10710_001]

Coordinates

chrchrUn_random:-:52098182..52100801

Molecular Weight (calculated)

59148.3 Da

IEP (calculated)

6.073

GRAVY (calculated)

0.010

Length

533 amino acids

Sequence
(BLAST)

001: MTYFPEEVVE HIVDFLGSHG DRNAVSTGKP HFADFNLVPY DWGGFAQPWI EAAARGCPGL EELRLKRMVV TDDDLELLAR SFPNFKSLVL VSCEGFSTDG
101: LAAIATYCRG LRELDLQENE VEDHGRQWLS CFPDSCTSLV SLNFACLKGE VNASALERLV ARCPNLRSLK LNHSISVESL NKILARAPHL VDLGTGSFAI
201: DNRSETYHRL INSFFKCKSL RSLSGFWDAS PFCLQALYPV CTNLTVLNLS YAPAIQSADL TKLIGLCFKL QKLWVLDCIG DKGLAVVAST CKELQELRVF
301: PSDIYGAGIT AVTEEGLVAI SSGCPKLNSL LYFCYQMTNS ALTTVAKNCP HFTRFRLCIL EPEKPDPVTN QPLDEGFGAI VRSCKNLRRL SVSGLLTDQV
401: FLYIGMYAER LEMLSIAFAG DSDKGMVYVL NGCKNLRKLE IRDCPFGDAA LLKDVAKYET MRSLWMSSCD VTLGGCKALA AKMPRLNVEI INENNGTCES
501: KENLSDLHKV EKMYFYRTVA GPRNDAPDFV WTL

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.