Factsheet for Zm00001d003911_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013302_P002
Zm00001d033976_P002
Zm00001d041416_P001
Zm00001d042193_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	Zm00001d013302_P002	AT3G23050.1	15992545
AT1G12820.1	Zm00001d033976_P002	AT3G23050.1	15992545
AT1G12820.1	Zm00001d041416_P001	AT3G23050.1	15992545
AT1G12820.1	Zm00001d042193_P001	AT4G02570.1	15992545
AT3G26810.1	Zm00001d013302_P002	AT3G23050.1	15992545
AT3G26810.1	Zm00001d033976_P002	AT3G23050.1	15992545
AT3G26810.1	Zm00001d041416_P001	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26136	Sorghum	cytosol	96.35	93.42
Zm00001d025268_P001	Maize	cytosol	91.48	91.8
Os04t0395600-01	Rice	cytosol	88.0	88.0
TraesCS2D01G285000.1	Wheat	cytosol	87.3	87.46
TraesCS2B01G302900.1	Wheat	cytosol	87.3	87.46
TraesCS2A01G286200.1	Wheat	cytosol	87.3	87.46
HORVU2Hr1G070800.1	Barley	cytosol	87.3	87.46
GSMUA_AchrUn_...	Banana	cytosol	68.0	73.36
GSMUA_Achr9P01140_001	Banana	cytosol	67.48	72.8
GSMUA_Achr6P08000_001	Banana	cytosol	67.48	72.8
GSMUA_Achr10P...	Banana	cytosol	66.09	71.29
GSMUA_Achr6P16510_001	Banana	cytosol	65.91	71.11
VIT_14s0068g01330.t01	Wine grape	cytosol	68.7	69.06
GSMUA_Achr6P20580_001	Banana	cytosol	58.78	67.6
KRG94665	Soybean	cytosol	66.43	66.78
CDY34211	Canola	cytosol	66.26	66.26
CDY28523	Canola	cytosol	66.26	66.26
Bra032954.1-P	Field mustard	cytosol	66.26	66.26
AT3G26810.1	Thale cress	cytosol	66.26	66.26
KRH06858	Soybean	cytosol	65.91	66.26
AT1G12820.1	Thale cress	cytosol	64.52	64.3
CDY31282	Canola	cytosol	65.04	63.71
CDX71968	Canola	cytosol	64.0	63.67
Bra026953.1-P	Field mustard	cytosol	64.0	63.67
KRH70053	Soybean	cytosol	63.3	63.53
CDY21068	Canola	cytosol	65.04	63.39
CDY16034	Canola	cytosol	63.83	63.39
Bra016754.1-P	Field mustard	cytosol	64.87	63.22
CDY26594	Canola	cytosol	63.48	63.15
KRH08397	Soybean	cytosol	60.17	60.38
Zm00001d007357_P005	Maize	cytosol	57.57	57.77
Zm00001d010863_P001	Maize	plastid	56.0	54.58
Zm00001d027975_P001	Maize	cytosol	43.48	41.81
Zm00001d048233_P001	Maize	cytosol	42.96	41.3
Zm00001d018126_P001	Maize	plastid	47.48	41.05
Zm00001d052188_P001	Maize	plastid	47.13	40.69
Zm00001d010082_P001	Maize	cytosol	32.0	30.72
Zm00001d038273_P001	Maize	cytosol	31.48	30.22
Zm00001d042833_P001	Maize	cytosol	31.3	30.1
Zm00001d012338_P001	Maize	cytosol	30.96	29.87
Zm00001d047848_P001	Maize	cytosol	30.09	29.27
Zm00001d028543_P001	Maize	cytosol	29.91	29.1

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100278846	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A1D6ECA1
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	ProteinID:ONM17931.1	ProteinID:ONM17932.1	ProteinID:ONM17933.1	ProteinID:ONM17934.1
ProteinID:ONM17935.1	ProteinID:ONM17937.1	ProteinID:ONM17940.1	ProteinID:ONM17943.1	ProteinID:ONM17947.1	ProteinID:ONM17948.1
ProteinID:ONM17949.1	ProteinID:ONM17950.1	PFAM:PF12937	PANTHER:PTHR43944	PANTHER:PTHR43944:SF9	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0004DE97B3	EnsemblPlantsGene:Zm00001d003911	EnsemblPlants:Zm00001d003911_P003	EnsemblPlants:Zm00001d003911_T003
SEG:seg	:	:	:	:	:

Description

Protein AUXIN SIGNALING F-BOX 3

Coordinates

chr2:+:66815688..66820606

Molecular Weight (calculated)

64265.1 Da

IEP (calculated)

7.449

GRAVY (calculated)

-0.023

Length

575 amino acids

Sequence
(BLAST)

001: MTYFPEEVVE HIFSFLPSHS DRNTVSLVCK VWYEVERLSR RAVFVGNCYA VRPERVVLRF PNIKALTVKG KPHFADFNLV PPDWGGYAGP WIDAAARSCV
101: GLEELRMKRM VVFDENLELL ARSFLRFKVL VLISCEGFST DGLAAIASHC KLLRELDLQE NDVEDRGPRW LSFPDSCTSL VSLNFACIKG EVNSGALERL
201: VARSPNLRSL RLNRSVSVDT LSKILLRAPN LEDLGTGNLT DEFQAESYSR LTSALEKCKK LRSLSGFWDA SPICVPYIYP LCHQLTGLNL SYTPTLDYSD
301: LAKMVSRCVK LQRLWVLDCI SDKGLQVVAS SCKDLQELRV FPSEFYVPGA SAVTEEGLVA ISSGCPKLTS LLYFCHQMTN EALITVANNC PNFIRFRLCI
401: LEPKKPDAMT GQPLDEGFGA IVRECKGLRR LSISGLLTDK VFMYIGKHAK YLEMLSIAFA GDSDKGMMDV MNGCKNLRKL EIRDSPFGDV ALLGNVAKYE
501: TMRSLWMSSC NVTLKGCQVL ASKMPMLNVE IMNELDGSSE MENHGDLSKV DKLYVYRTTA GARDDAPNFV KILQS

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.