Factsheet for Os04t0395600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0935300-02
Os03t0633500-01
Os03t0742900-01
Os05t0193900-00
Os12t0601300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	Os03t0633500-01	AT3G23050.1	15992545
AT1G12820.1	Os03t0742900-01	AT3G23050.1	15992545
AT1G12820.1	Os12t0601300-01	AT3G23050.1	15992545
AT1G12820.1	Os01t0935300-02	AT4G02570.1	15992545
AT1G12820.1	Os05t0193900-00	AT4G02570.1	15992545
AT3G26810.1	Os03t0633500-01	AT3G23050.1	15992545
AT3G26810.1	Os03t0742900-01	AT3G23050.1	15992545
AT3G26810.1	Os12t0601300-01	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G285000.1	Wheat	cytosol	90.43	90.59
TraesCS2A01G286200.1	Wheat	cytosol	90.43	90.59
HORVU2Hr1G070800.1	Barley	cytosol	90.43	90.59
TraesCS2B01G302900.1	Wheat	cytosol	90.26	90.42
Zm00001d003911_P003	Maize	cytosol	88.0	88.0
KXG26136	Sorghum	cytosol	89.39	86.68
Zm00001d025268_P001	Maize	cytosol	85.04	85.34
GSMUA_Achr9P01140_001	Banana	cytosol	69.39	74.86
GSMUA_AchrUn_...	Banana	cytosol	69.22	74.67
GSMUA_Achr6P08000_001	Banana	cytosol	68.35	73.73
GSMUA_Achr10P...	Banana	cytosol	67.65	72.98
GSMUA_Achr6P16510_001	Banana	cytosol	67.3	72.61
GSMUA_Achr6P20580_001	Banana	cytosol	60.7	69.8
VIT_14s0068g01330.t01	Wine grape	cytosol	69.22	69.58
AT3G26810.1	Thale cress	cytosol	66.61	66.61
Bra032954.1-P	Field mustard	cytosol	66.09	66.09
CDY34211	Canola	cytosol	65.91	65.91
CDY28523	Canola	cytosol	65.74	65.74
KRG94665	Soybean	cytosol	65.39	65.73
KRH06858	Soybean	cytosol	65.04	65.38
CDX71968	Canola	cytosol	64.52	64.19
Bra026953.1-P	Field mustard	cytosol	64.35	64.01
AT1G12820.1	Thale cress	cytosol	64.17	63.95
CDY16034	Canola	cytosol	64.17	63.73
CDY26594	Canola	cytosol	63.83	63.49
Bra016754.1-P	Field mustard	cytosol	64.7	63.05
CDY31282	Canola	cytosol	64.35	63.03
KRH70053	Soybean	cytosol	62.78	63.0
CDY21068	Canola	cytosol	64.52	62.88
Os11t0515500-01	Rice	cytosol	60.52	61.27
KRH08397	Soybean	cytosol	60.52	60.73
Os05t0150500-00	Rice	plastid	57.57	56.39
Os03t0187500-01	Rice	cytosol	22.96	52.38
Os02t0759700-01	Rice	cytosol	48.87	44.11
Os05t0449500-01	Rice	cytosol	31.83	30.65
Os01t0853400-01	Rice	cytosol	30.96	29.92
Os03t0265500-01	Rice	plasma membrane	30.26	29.54

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EntrezGene:4335696	EMBL:AK100862
ProteinID:BAF14573.1	ProteinID:BAS88999.1	ProteinID:CAD40545.1	ProteinID:EAZ30576.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0000822	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0010011	GO:GO:0016567
GO:GO:0019005	GO:GO:0019538	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
EnsemblPlantsGene:Os04g0395600	EnsemblPlants:Os04t0395600-01	PFAM:PF12937	PANTHER:PTHR43944	PANTHER:PTHR43944:SF9	UniProt:Q7XVM8
SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00001B1D31	RefSeq:XP_015635915.1
SEG:seg	:	:	:	:	:

Description

Auxin signaling f-box 2, F-box protein 206Similar to TRANSPORT INHIBITOR RESPONSE 1 protein (F-box/LRR-repeat protein 1). (Os04t0395600-01);Similar to TRANSPORT INHIBITOR RESPONSE 1 protein (F-box/LRR-repeat protein 1). (Os04t0395600-02);Similar to AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding / ubiquitin-protein ligase. (Os04t0395600-03)

Coordinates

chr4:-:19453774..19458208

Molecular Weight (calculated)

64058.7 Da

IEP (calculated)

7.730

GRAVY (calculated)

-0.026

Length

575 amino acids

Sequence
(BLAST)

001: MTYFPEEVVE HIFSFLPAQR DRNTVSLVCK VWYEIERLSR RGVFVGNCYA VRAGRVAARF PNVRALTVKG KPHFADFNLV PPDWGGYAGP WIEAAARGCH
101: GLEELRMKRM VVSDESLELL ARSFPRFRAL VLISCEGFST DGLAAVASHC KLLRELDLQE NEVEDRGPRW LSCFPDSCTS LVSLNFACIK GEVNAGSLER
201: LVSRSPNLRS LRLNRSVSVD TLAKILLRTP NLEDLGTGNL TDDFQTESYF KLTSALEKCK MLRSLSGFWD ASPVCLSFIY PLCAQLTGLN LSYAPTLDAS
301: DLTKMISRCV KLQRLWVLDC ISDKGLQVVA SSCKDLQELR VFPSDFYVAG YSAVTEEGLV AVSLGCPKLN SLLYFCHQMT NAALVTVAKN CPNFTRFRLC
401: ILEPGKPDVV TSQPLDEGFG AIVRECKGLQ RLSISGLLTD KVFMYIGKYA KQLEMLSIAF AGDSDKGMMH VMNGCKNLRK LEIRDSPFGD AALLGNFARY
501: ETMRSLWMSS CNVTLKGCQV LASKMPMLNV EVINERDGSN EMEENHGDLP KVEKLYVYRT TAGARDDAPN FVKIL

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.