Factsheet for GSMUA_Achr10P12000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P21020_001
GSMUA_Achr4P22520_001
GSMUA_Achr8P20610_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P17620_001
GSMUA_Achr9P25550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P17620_001	AT4G02570.1	15992545
AT3G26810.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	88.18	88.18
GSMUA_Achr6P16510_001	Banana	cytosol	87.43	87.43
GSMUA_Achr6P08000_001	Banana	cytosol	86.12	86.12
GSMUA_Achr9P01140_001	Banana	cytosol	81.61	81.61
GSMUA_Achr6P20580_001	Banana	cytosol	71.48	76.2
VIT_14s0068g01330.t01	Wine grape	cytosol	73.17	68.18
Os04t0395600-01	Rice	cytosol	72.98	67.65
KRG94665	Soybean	cytosol	71.48	66.61
KRH06858	Soybean	cytosol	71.11	66.26
HORVU2Hr1G070800.1	Barley	cytosol	71.29	66.2
Zm00001d003911_P003	Maize	cytosol	71.29	66.09
TraesCS2D01G285000.1	Wheat	cytosol	71.11	66.03
TraesCS2B01G302900.1	Wheat	cytosol	71.11	66.03
TraesCS2A01G286200.1	Wheat	cytosol	70.92	65.85
HORVU6Hr1G021040.2	Barley	extracellular	17.26	65.71
AT3G26810.1	Thale cress	cytosol	70.36	65.22
KXG26136	Sorghum	cytosol	72.42	65.09
KRH70053	Soybean	cytosol	69.61	64.75
Bra032954.1-P	Field mustard	cytosol	69.79	64.7
CDY34211	Canola	cytosol	69.61	64.52
CDY28523	Canola	cytosol	69.61	64.52
Zm00001d025268_P001	Maize	cytosol	69.23	64.4
AT1G12820.1	Thale cress	cytosol	68.67	63.43
GSMUA_Achr5P26930_001	Banana	cytosol	54.97	63.15
Bra026953.1-P	Field mustard	cytosol	66.6	61.42
CDX71968	Canola	cytosol	66.6	61.42
CDY16034	Canola	cytosol	66.6	61.31
KRH08397	Soybean	cytosol	65.85	61.26
CDY26594	Canola	cytosol	66.04	60.9
CDY31282	Canola	cytosol	66.79	60.65
Bra016754.1-P	Field mustard	cytosol	66.6	60.17
CDY21068	Canola	cytosol	66.23	59.83
HORVU5Hr1G075620.2	Barley	cytosol	63.41	59.51
TraesCS5A01G281100.1	Wheat	cytosol	63.23	59.23
TraesCS5D01G288000.1	Wheat	cytosol	63.23	59.23
GSMUA_Achr3P23850_001	Banana	cytosol	64.54	59.11
Os11t0515500-01	Rice	cytosol	62.85	58.98
TraesCS5B01G280100.1	Wheat	cytosol	63.23	58.92
EES09791	Sorghum	cytosol	61.35	56.57
Zm00001d007357_P005	Maize	cytosol	58.54	54.45
GSMUA_Achr3P06710_001	Banana	cytosol	49.91	46.42
GSMUA_Achr5P05520_001	Banana	cytosol	50.66	46.0
GSMUA_Achr7P11780_001	Banana	cytosol	50.28	45.42
GSMUA_Achr5P28930_001	Banana	cytosol	30.58	29.11
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	30.77	28.13
GSMUA_Achr9P03690_001	Banana	cytosol	31.52	27.86
GSMUA_Achr8P02350_001	Banana	cytosol	8.07	25.0

Protein Annotations

EnsemblPlants:GSMUA_Achr10P12000_001	EnsemblPlants:GSMUA_Achr10T12000_001	EnsemblPlantsGene:GSMUA_Achr10G12000_001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF5	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0002961DFD	UniProt:M0RHH6	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:

Description

Transport inhibitor response 1-like protein Os04g0395600 [Source:GMGC_GENE;Acc:GSMUA_Achr10G12000_001]

Coordinates

chr10:-:21184755..21187385

Molecular Weight (calculated)

59322.8 Da

IEP (calculated)

6.027

GRAVY (calculated)

0.055

Length

533 amino acids

Sequence
(BLAST)

001: MTYFPEEVVE HIFDFLGSHR DRNAVSTGKP HFADYNLVPY DWGGFALPWI KAAVRRCPGL EDLRLKRMVV TDDDLDLLAR SFPNFRSLVL VSCEGFSTDG
101: LAAIATYCRG LRELDLQENE VEDHGRQWLS CFHESCTSLV SLNFACLKGE VNAGVLERLV ARCPNLRSLK LNRAVSVESL NEIVARAPYL VDLGTGSFAV
201: DHHTDAYQRL MNSFSKCKSL SSLSGFWEAS PHCLDAVYPV CINLTVLNMS YAPAIQADDL IKLISLCFKL QKLWVLDCIG DKGLAVVAST CKELQELRVF
301: PSDIYGAGAT SVTEEGLVAI SSGCPKLNSL LYFCYQMTNA ALITVAKNCP HFTRFRLCIL DPWKPDPVTN QPLDEGFGAI VRSCKNLRRL SLSGLLTDQV
401: FLYIGLYAKC LEMLSIAFAG DSDKGMVCIL KGCKNLRKLE IRDCPFGDIA LLNDVAKYET MRSLWMSSCD VTLGGCKALA AKMPRLNVEI INESEGTDKL
501: EENISDLHKV EKMYVYRTVA GPRNDAPDFV WTL

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.