Factsheet for Zm00001d007357_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013302_P002
Zm00001d033976_P002
Zm00001d041416_P001
Zm00001d042193_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	Zm00001d013302_P002	AT3G23050.1	15992545
AT1G12820.1	Zm00001d033976_P002	AT3G23050.1	15992545
AT1G12820.1	Zm00001d041416_P001	AT3G23050.1	15992545
AT1G12820.1	Zm00001d042193_P001	AT4G02570.1	15992545
AT3G26810.1	Zm00001d013302_P002	AT3G23050.1	15992545
AT3G26810.1	Zm00001d033976_P002	AT3G23050.1	15992545
AT3G26810.1	Zm00001d041416_P001	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09791	Sorghum	cytosol	83.77	83.05
HORVU6Hr1G021040.2	Barley	extracellular	17.98	73.57
TraesCS5A01G281100.1	Wheat	cytosol	68.06	68.54
HORVU5Hr1G075620.2	Barley	cytosol	67.71	68.31
TraesCS5B01G280100.1	Wheat	cytosol	67.89	68.01
TraesCS5D01G288000.1	Wheat	cytosol	67.19	67.66
Os11t0515500-01	Rice	cytosol	66.84	67.43
GSMUA_AchrUn_...	Banana	cytosol	56.89	61.16
GSMUA_Achr6P08000_001	Banana	cytosol	56.72	60.98
GSMUA_Achr9P01140_001	Banana	cytosol	54.97	59.1
VIT_14s0068g01330.t01	Wine grape	cytosol	58.46	58.57
GSMUA_Achr10P...	Banana	cytosol	54.45	58.54
GSMUA_Achr6P16510_001	Banana	cytosol	54.45	58.54
AT3G26810.1	Thale cress	cytosol	57.94	57.74
Zm00001d025268_P001	Maize	cytosol	57.59	57.59
Zm00001d003911_P003	Maize	cytosol	57.77	57.57
KRG94665	Soybean	cytosol	57.42	57.52
KRH06858	Soybean	cytosol	57.24	57.34
Bra032954.1-P	Field mustard	cytosol	57.42	57.22
AT1G12820.1	Thale cress	cytosol	57.59	57.19
CDY34211	Canola	cytosol	57.24	57.04
CDY28523	Canola	cytosol	57.24	57.04
GSMUA_Achr6P20580_001	Banana	cytosol	49.39	56.6
Bra026953.1-P	Field mustard	cytosol	56.54	56.06
KRH70053	Soybean	cytosol	56.02	56.02
CDY16034	Canola	cytosol	56.54	55.96
CDX71968	Canola	cytosol	56.37	55.88
CDY26594	Canola	cytosol	56.2	55.71
CDY31282	Canola	cytosol	57.07	55.71
Bra016754.1-P	Field mustard	cytosol	57.24	55.59
CDY21068	Canola	cytosol	57.07	55.42
KRH08397	Soybean	cytosol	55.32	55.32
Zm00001d010863_P001	Maize	plastid	50.61	49.15
Zm00001d027975_P001	Maize	cytosol	43.63	41.81
Zm00001d048233_P001	Maize	cytosol	43.11	41.3
Zm00001d018126_P001	Maize	plastid	46.6	40.15
Zm00001d052188_P001	Maize	plastid	46.6	40.09
Zm00001d038273_P001	Maize	cytosol	31.24	29.88
Zm00001d010082_P001	Maize	cytosol	30.37	29.05
Zm00001d012338_P001	Maize	cytosol	29.67	28.52
Zm00001d028543_P001	Maize	cytosol	29.32	28.43
Zm00001d047848_P001	Maize	cytosol	29.14	28.26
Zm00001d042833_P001	Maize	cytosol	29.32	28.09

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100281739	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:B4FYV0
EMBL:BT042288	EMBL:EU957719	InterPro:F-box-like_dom_sf	GO:GO:0000822	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	ProteinID:ONM26592.1	ProteinID:ONM26593.1
ProteinID:ONM26594.1	ProteinID:ONM26595.1	ProteinID:ONM26596.1	PANTHER:PTHR43944	PANTHER:PTHR43944:SF5	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00017B8202	EnsemblPlantsGene:Zm00001d007357	EnsemblPlants:Zm00001d007357_P005	EnsemblPlants:Zm00001d007357_T005

Description

Protein AUXIN SIGNALING F-BOX 3

Coordinates

chr2:+:229613679..229626678

Molecular Weight (calculated)

63065.0 Da

IEP (calculated)

8.341

GRAVY (calculated)

0.153

Length

573 amino acids

Sequence
(BLAST)

001: MAYFPDEVVG YILGYVTSHQ DRNAVSLVCR AWYDIERHGR HSVLVRNCYA VCPERVHMRF PNMRALSLKG KPHFAEFNLV PAGWGATANP WVDACARACP
101: GLEELRLKFM VVTDECLKLL SLSFTNFKSL VLVCCEGFST TGLANIATNC RFLKELDLQK SCVKHQDHQW INCFPKSSTS LECLNFSCLT GEVNAVALEE
201: LVARSPNLKS LRLNLAVPFD VLSRILSRTP KLEDLGTGSF LQGNDPAAYA SLCRALENCT SLKSISGFWD APGFYVQGIL SNCKIRNLTC LNLSYATLIQ
301: STQLIGIIRH CKKLHVLWVL DHIGDEGLKA VSFSCPDLQE LRVYPSVVAP RGTVTEEGLV ALSSCRKLQH VLFSCVRMTN TALMTIARYC PRLTSFRLCI
401: RKPRSADAVT GQPLDEGFGA IVRSCRGLRR LAMSGLLTDS VFLYIGMYAE KLEMLSVTFA GDTDDGMVYV LNGCRNLKKL VIKESPFGDA ALLAGAHRYE
501: SMRSLWMSSC QITLGGCKAL AATMPNINVE VIGGASFGAM DGGVSGARKV DMLYLYRTLA GPRCDTPGFV SIL

Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL

Arabidopsis Description

AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.