Factsheet for Bra032954.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001900.1-P
Bra033886.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26810.1	Bra001900.1-P	AT3G23050.1	15992545
AT3G26810.1	Bra033886.1-P	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34211	Canola	cytosol	99.48	99.48
AT3G26810.1	Thale cress	cytosol	92.87	92.87
Bra026953.1-P	Field mustard	cytosol	83.3	82.87
Bra016754.1-P	Field mustard	cytosol	82.43	80.34
VIT_14s0068g01330.t01	Wine grape	cytosol	75.3	75.7
KRG94665	Soybean	cytosol	74.09	74.48
KRH06858	Soybean	cytosol	73.04	73.43
KRH70053	Soybean	cytosol	72.35	72.6
GSMUA_AchrUn_...	Banana	cytosol	66.61	71.86
GSMUA_Achr6P08000_001	Banana	cytosol	65.39	70.54
GSMUA_Achr10P...	Banana	cytosol	64.7	69.79
GSMUA_Achr6P16510_001	Banana	cytosol	64.52	69.61
GSMUA_Achr9P01140_001	Banana	cytosol	64.17	69.23
KRH08397	Soybean	cytosol	68.87	69.11
Zm00001d003911_P003	Maize	cytosol	66.26	66.26
Os04t0395600-01	Rice	cytosol	66.09	66.09
TraesCS2D01G285000.1	Wheat	cytosol	65.91	66.03
HORVU2Hr1G070800.1	Barley	cytosol	65.91	66.03
TraesCS2A01G286200.1	Wheat	cytosol	65.74	65.85
TraesCS2B01G302900.1	Wheat	cytosol	65.57	65.68
KXG26136	Sorghum	cytosol	66.96	64.92
Zm00001d025268_P001	Maize	cytosol	64.7	64.92
GSMUA_Achr6P20580_001	Banana	cytosol	56.35	64.8
HORVU6Hr1G021040.2	Barley	extracellular	14.96	61.43
TraesCS5D01G288000.1	Wheat	cytosol	58.61	59.23
Os11t0515500-01	Rice	cytosol	58.43	59.15
TraesCS5B01G280100.1	Wheat	cytosol	58.78	59.09
HORVU5Hr1G075620.2	Barley	cytosol	58.26	58.98
TraesCS5A01G281100.1	Wheat	cytosol	58.26	58.88
EES09791	Sorghum	cytosol	59.13	58.82
Bra007720.1-P	Field mustard	cytosol	60.17	58.15
Bra003518.1-P	Field mustard	cytosol	59.83	57.91
Zm00001d007357_P005	Maize	cytosol	57.22	57.42
Bra034191.1-P	Field mustard	cytosol	58.09	57.09
Bra000842.1-P	Field mustard	cytosol	57.57	56.48
Bra014378.1-P	Field mustard	cytosol	54.43	50.0
Bra000604.1-P	Field mustard	cytosol, plastid	52.52	49.75
Bra013798.1-P	Field mustard	cytosol	49.74	47.12
Bra000156.1-P	Field mustard	cytosol	31.48	30.68
Bra005000.1-P	Field mustard	cytosol	31.83	30.35
Bra017044.1-P	Field mustard	cytosol	30.43	28.97
Bra017045.1-P	Field mustard	cytosol	30.09	28.5

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra032954	EnsemblPlants:Bra032954.1
EnsemblPlants:Bra032954.1-P	InterPro:F-box_dom	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010011	GO:GO:0010152	GO:GO:0016020
GO:GO:0048443	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4EVX1
PANTHER:PTHR43944	PANTHER:PTHR43944:SF9	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI00025457D8

Description

AT3G26810 (E=0.0) AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding / ubiquitin-protein ligase

Coordinates

chrA02:-:22308002..22310383

Molecular Weight (calculated)

64668.2 Da

IEP (calculated)

7.024

GRAVY (calculated)

-0.077

Length

575 amino acids

Sequence
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNSISLVCK SWFKIERYSR QNVFIGNCYA INPERLLRRF PCFKSLTLKG KPHFADFNLV PHGWGGFVQP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFST DGLASIASNC RHLQDLDLQE NEIDDHRGQW LSCFPETYTS LVTLNFACLE GETNLVALER
201: LVARSPNLRS LKLNRAVPLD ALARLMACAP QIVDLGVGSY EDEQDSESCL KLQAAIRKCT SLRSLSGFLE AAPHCLSAFH PVCHNLTSLN LSYAAEIHGS
301: HLIKLIEHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPTDLQGGG NTAVTEDGLV AISAGCPKLH SILYFCQQMT NAALITVAKN CPNFIRFRLC
401: ILEPHKPDHV TSQPLDEGFG AIVQACKNLK RLSVSGLLTD QVFLYIGMYA TELEMLSIAF AGDTDKGMLY VLNGCKKMRK LEIRDSPFGD AALLADVNKY
501: ETMRSLWMSS CEVTLGGCKR LARKAPWLNV EIINENDNNR MEENGYEGRQ KVDKLYLYRT VVGTRVDAPP FVWIH

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.