Factsheet for Bra000842.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra001900.1-P
Bra003735.1-P
Bra008231.1-P
Bra009867.1-P
Bra015801.1-P
Bra033886.1-P
Bra036257.1-P
Bra036557.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03190.1	Bra003735.1-P	AT1G75950.1	12008900
AT4G03190.1	Bra008231.1-P	AT1G75950.1	12008900
AT4G03190.1	Bra015801.1-P	AT1G75950.1	12008900
AT4G03190.1	Bra003735.1-P	AT1G75950.1	15992545
AT4G03190.1	Bra008231.1-P	AT1G75950.1	15992545
AT4G03190.1	Bra015801.1-P	AT1G75950.1	15992545
AT4G03190.1	Bra001900.1-P	AT3G23050.1	15992545
AT4G03190.1	Bra033886.1-P	AT3G23050.1	15992545
AT4G03190.1	Bra000874.1-P	AT4G02570.1	15992545
AT4G03190.1	Bra036257.1-P	AT4G02570.1	15992545
AT4G03190.1	Bra009867.1-P	AT5G25890.1	21734647
AT4G03190.1	Bra036557.1-P	AT5G25890.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90899	Canola	cytosol	99.15	99.15
Bra034191.1-P	Field mustard	cytosol	84.81	84.96
AT4G03190.1	Thale cress	cytosol, plastid	84.64	84.79
Bra007720.1-P	Field mustard	cytosol	67.58	66.55
Bra003518.1-P	Field mustard	cytosol	66.72	65.82
GSMUA_Achr5P26930_001	Banana	cytosol	49.32	62.28
GSMUA_Achr3P23850_001	Banana	cytosol	59.56	59.97
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	58.87	58.57
TraesCS1A01G091300.1	Wheat	cytosol	58.87	58.28
Os05t0150500-00	Rice	plastid	58.36	58.26
KXG21312	Sorghum	plastid	58.7	58.21
Zm00001d010863_P001	Maize	plastid	58.19	57.8
Bra032954.1-P	Field mustard	cytosol	56.48	57.57
TraesCS1D01G099900.1	Wheat	cytosol	58.7	57.33
Bra014378.1-P	Field mustard	cytosol	60.75	56.87
Bra026953.1-P	Field mustard	cytosol	55.46	56.23
Bra016754.1-P	Field mustard	cytosol	55.29	54.92
HORVU1Hr1G021550.4	Barley	cytosol	58.02	52.96
Bra000604.1-P	Field mustard	cytosol, plastid	47.61	45.96
Bra013798.1-P	Field mustard	cytosol	46.08	44.48
Bra000156.1-P	Field mustard	cytosol	29.86	29.66
Bra005000.1-P	Field mustard	cytosol	30.03	29.19
Bra017044.1-P	Field mustard	cytosol	28.84	27.98
Bra017045.1-P	Field mustard	cytosol	28.84	27.84

Protein Annotations

EnsemblPlants:Bra000842.1	EnsemblPlants:Bra000842.1-P	EnsemblPlantsGene:Bra000842	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	PFAM:PF00646	SMART:SM00256	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0002540534	UniProt:M4C9G3	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:

Description

AT4G03190 (E=1e-291) GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROTEIN 1); auxin binding / protein binding / ubiquitin-protein ligase

Coordinates

chrA03:+:13443232..13445774

Molecular Weight (calculated)

65635.8 Da

IEP (calculated)

5.476

GRAVY (calculated)

-0.028

Length

586 amino acids

Sequence
(BLAST)

001: MDLRLPSKVL EHILSFVDSN EDRNSVSLVC KSWFETERRT RKRVIVRNCY AVTPEAVARR FPEMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAVKC
101: PSLEELRLKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGLAAIAVA CSNLRELELR ECIVEDLGGD WLSYFPETLT SLVSLDFSCL DSEVKLSDLE
201: RLVSRSPNLK SLKLNRAVSL DALGSLLRLA PQLVELGTGS FSDKLDQEAV SKLSQAFSEM KELKSLSGLW DVLPEYIPLL YSVCPGLTSL NLSYATVQMP
301: NLVELLTRCS NLQKLWVMDL IEDKGLEVVA SSCKELRELR VFPSGAEGLN DTNVAMTEQG LVSVSEGCPN LESVLYFCVQ FTNAAMITIA RNRPNLKCFR
401: LCVMEPFAPD HKTQKPLDEG FKAIVERCKD LQRLSVSGLL TDKAFEYIGT HGKKLRMLSI AFAGDSDLML HHLLSGCESL NKLEIRDCPF GDTALLENAA
501: KLETMRSLWM SSCCVSFGAC KLLSQKMPKL NVEVIDEHPL ETRPDSSPVE RIYIYRTLAG PRLDMPEFVW TIQKNPEIGV SHLAIK

Best Arabidopsis Sequence Match ( AT4G03190.1 )
(BLAST)

001: MGLRFPPKVL EHILSFIDSN EDRNSVSLVC KSWFETERKT RKRVFVGNCY AVSPAAVTRR FPEMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAAKS
101: SSLEEIRMKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGIAAIAAT CRNLRVLELR ECIVEDLGGD WLSYFPESST SLVSLDFSCL DSEVKISDLE
201: RLVSRSPNLK SLKLNPAVTL DGLVSLLRCA PQLTELGTGS FAAQLKPEAF SKLSEAFSNC KQLQSLSGLW DVLPEYLPAL YSVCPGLTSL NLSYATVRMP
301: DLVELLRRCS KLQKLWVMDL IEDKGLEAVA SYCKELRELR VFPSEPDLDA TNIPLTEQGL VFVSKGCRKL ESVLYFCVQF TNAALFTIAR KRPNLKCFRL
401: CVIEPFAPDY KTNEPLDKGF KAIAEGCRDL RRLSVSGLLS DKAFKYIGKH AKKVRMLSIA FAGDSDLMLH HLLSGCESLK KLEIRDCPFG DTALLEHAAK
501: LETMRSLWMS SCFVSFGACK LLSQKMPRLN VEVIDEHPPE SRPESSPVER IYIYRTVAGP RMDTPEFVWT IHKNPENGVS HLAIK

Arabidopsis Description

GRH1GRR1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR12]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.