Factsheet for Bra015801.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000156.1-P
Bra000729.1-P
Bra000842.1-P
Bra000874.1-P
Bra001900.1-P
Bra002686.1-P
Bra003518.1-P
Bra003700.1-P
Bra004092.1-P
Bra004220.1-P
Bra005000.1-P
Bra007494.1-P
Bra007720.1-P
Bra007843.1-P
Bra008345.1-P
Bra009835.1-P
Bra010985.1-P
Bra012486.1-P
Bra013201.1-P
Bra013532.1-P
Bra013776.1-P
Bra014378.1-P
Bra015154.1-P
Bra015474.1-P
Bra015630.1-P
Bra017044.1-P
Bra017045.1-P
Bra017339.1-P
Bra017407.1-P
Bra017949.1-P
Bra020625.1-P
Bra020714.1-P
Bra020754.1-P
Bra024392.1-P
Bra024763.1-P
Bra024801.1-P
Bra024824.1-P
Bra024825.1-P
Bra024827.1-P
Bra024867.1-P
Bra024868.1-P
Bra025080.1-P
Bra025177.1-P
Bra026575.1-P
Bra026609.1-P
Bra026645.1-P
Bra027000.1-P
Bra027603.1-P
Bra027618.1-P
Bra029137.1-P
Bra030038.1-P
Bra030269.1-P
Bra030346.1-P
Bra030639.1-P
Bra030690.1-P
Bra031582.1-P
Bra032820.1-P
Bra033585.1-P
Bra033886.1-P
Bra034004.1-P
Bra034191.1-P
Bra034254.1-P
Bra035198.1-P
Bra036183.1-P
Bra036257.1-P
Bra036266.1-P
Bra036353.1-P
Bra036542.1-P
Bra037120.1-P
Bra037508.1-P
Bra038977.1-P
Bra039878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75950.1	Bra015474.1-P	AT1G06110.1	12169662
AT1G75950.1	Bra030639.1-P	AT1G06110.1	12169662
AT1G75950.1	Bra017949.1-P	AT1G21760.1	12169662
AT1G75950.1	Bra017949.1-P	AT1G21760.1	12795696
AT1G75950.1	Bra030346.1-P	AT1G23780.1	12795696
AT1G75950.1	Bra010985.1-P	AT1G25280.1	12795696
AT1G75950.1	Bra012486.1-P	AT1G25280.1	12795696
AT1G75950.1	Bra024763.1-P	AT1G25280.1	12795696
AT1G75950.1	Bra030038.1-P	AT1G27340.1	12795696
AT1G75950.1	Bra032820.1-P	AT1G27340.1	12795696
AT1G75950.1	Bra039878.1-P	AT1G30950.1	12169662
AT1G75950.1	Bra039878.1-P	AT1G30950.1	12795696
AT1G75950.1	Bra039878.1-P	AT1G30950.1	12826617
AT1G75950.1	Bra039878.1-P	AT1G30950.1	15749712
AT1G75950.1	Bra038977.1-P	AT1G55000.1	12169662
AT1G75950.1	Bra038977.1-P	AT1G55000.1	21798944
AT1G75950.1	Bra027000.1-P	AT1G63090.1	12795696
AT1G75950.1	Bra027618.1-P	AT1G63090.1	12795696
AT1G75950.1	Bra004092.1-P	AT1G67340.1	12169662
AT1G75950.1	Bra004220.1-P	AT1G67340.1	12169662
AT1G75950.1	Bra034004.1-P	AT1G67340.1	12169662
AT1G75950.1	Bra003700.1-P	AT1G76920.1	12169662
AT1G75950.1	Bra003700.1-P	AT1G76920.1	12795696
AT1G75950.1	Bra003700.1-P	AT1G76920.1	21798944
AT1G75950.1	Bra008345.1-P	AT1G78100.1	12169662
AT1G75950.1	Bra015630.1-P	AT1G78100.1	12169662
AT1G75950.1	Bra035198.1-P	AT1G80110.1	12795696
AT1G75950.1	Bra024867.1-P	AT2G01620.1	12795696
AT1G75950.1	Bra024868.1-P	AT2G01620.1	12795696
AT1G75950.1	Bra026645.1-P	AT2G01620.1	12795696
AT1G75950.1	Bra024824.1-P	AT2G02230.1	12795696
AT1G75950.1	Bra024825.1-P	AT2G02230.1	12795696
AT1G75950.1	Bra024827.1-P	AT2G02230.1	12795696
AT1G75950.1	Bra026609.1-P	AT2G02230.1	12795696
AT1G75950.1	Bra017407.1-P	AT2G02870.1	12795696
AT1G75950.1	Bra024801.1-P	AT2G02870.1	12795696
AT1G75950.1	Bra026575.1-P	AT2G02870.1	12795696
AT1G75950.1	Bra017407.1-P	AT2G02870.1	21798944
AT1G75950.1	Bra024801.1-P	AT2G02870.1	21798944
AT1G75950.1	Bra026575.1-P	AT2G02870.1	21798944
AT1G75950.1	Bra013201.1-P	AT2G04550.1	12795696
AT1G75950.1	Bra015154.1-P	AT2G04550.1	12795696
AT1G75950.1	Bra013201.1-P	AT2G04550.1	21798944
AT1G75950.1	Bra015154.1-P	AT2G04550.1	21798944
AT1G75950.1	Bra030269.1-P	AT2G21950.1	12795696
AT1G75950.1	Bra007843.1-P	AT2G24540.1	12795696
AT1G75950.1	Bra007843.1-P	AT2G24540.1	14653999
AT1G75950.1	Bra034254.1-P	AT2G25490.1	12169662
AT1G75950.1	Bra034254.1-P	AT2G25490.1	14675533
AT1G75950.1	Bra034254.1-P	AT2G25490.1	14749489
AT1G75950.1	Bra034254.1-P	AT2G25490.1	21798944
AT1G75950.1	Bra000156.1-P	AT2G39940.1	12172031
AT1G75950.1	Bra005000.1-P	AT2G39940.1	12172031
AT1G75950.1	Bra017044.1-P	AT2G39940.1	12172031
AT1G75950.1	Bra017045.1-P	AT2G39940.1	12172031
AT1G75950.1	Bra000156.1-P	AT2G39940.1	12445118
AT1G75950.1	Bra005000.1-P	AT2G39940.1	12445118
AT1G75950.1	Bra017044.1-P	AT2G39940.1	12445118
AT1G75950.1	Bra017045.1-P	AT2G39940.1	12445118
AT1G75950.1	Bra000156.1-P	AT2G39940.1	14749489
AT1G75950.1	Bra005000.1-P	AT2G39940.1	14749489
AT1G75950.1	Bra017044.1-P	AT2G39940.1	14749489
AT1G75950.1	Bra017045.1-P	AT2G39940.1	14749489
AT1G75950.1	Bra000156.1-P	AT2G39940.1	21798944
AT1G75950.1	Bra005000.1-P	AT2G39940.1	21798944
AT1G75950.1	Bra017044.1-P	AT2G39940.1	21798944
AT1G75950.1	Bra017045.1-P	AT2G39940.1	21798944
AT1G75950.1	Bra020754.1-P	AT3G06380.1	15064372
AT1G75950.1	Bra001900.1-P	AT3G23050.1	15208392
AT1G75950.1	Bra033886.1-P	AT3G23050.1	15208392
AT1G75950.1	Bra017339.1-P	AT3G26000.1	12795696
AT1G75950.1	Bra025177.1-P	AT3G26000.1	12795696
AT1G75950.1	Bra036353.1-P	AT3G26000.1	12795696
AT1G75950.1	Bra007494.1-P	AT3G59940.1	12795696
AT1G75950.1	Bra003518.1-P	AT3G62980.1	10398681
AT1G75950.1	Bra007720.1-P	AT3G62980.1	10398681
AT1G75950.1	Bra014378.1-P	AT3G62980.1	10398681
AT1G75950.1	Bra003518.1-P	AT3G62980.1	12795696
AT1G75950.1	Bra007720.1-P	AT3G62980.1	12795696
AT1G75950.1	Bra014378.1-P	AT3G62980.1	12795696
AT1G75950.1	Bra036266.1-P	AT4G02440.1	12795696
AT1G75950.1	Bra036266.1-P	AT4G02440.1	16412087
AT1G75950.1	Bra036266.1-P	AT4G02440.1	21798944
AT1G75950.1	Bra000874.1-P	AT4G02570.1	15659098
AT1G75950.1	Bra036257.1-P	AT4G02570.1	15659098
AT1G75950.1	Bra000874.1-P	AT4G02570.1	15749712
AT1G75950.1	Bra036257.1-P	AT4G02570.1	15749712
AT1G75950.1	Bra000874.1-P	AT4G02570.1	16412087
AT1G75950.1	Bra036257.1-P	AT4G02570.1	16412087
AT1G75950.1	Bra000842.1-P	AT4G03190.1	12008900
AT1G75950.1	Bra034191.1-P	AT4G03190.1	12008900
AT1G75950.1	Bra000842.1-P	AT4G03190.1	21798944
AT1G75950.1	Bra034191.1-P	AT4G03190.1	21798944
AT1G75950.1	Bra030690.1-P	AT4G05460.1	12795696
AT1G75950.1	Bra031582.1-P	AT4G05460.1	12795696
AT1G75950.1	Bra000729.1-P	AT4G10930.1	12795696
AT1G75950.1	Bra013532.1-P	AT4G21510.1	12795696
AT1G75950.1	Bra013776.1-P	AT4G24210.1	15161962
AT1G75950.1	Bra033585.1-P	AT4G38940.1	12169662
AT1G75950.1	Bra009835.1-P	AT5G25350.1	14675533
AT1G75950.1	Bra036542.1-P	AT5G25350.1	14675533
AT1G75950.1	Bra025080.1-P	AT5G45360.1	12795696
AT1G75950.1	Bra027603.1-P	AT5G45360.1	12795696
AT1G75950.1	Bra020714.1-P	AT5G48170.1	15161962
AT1G75950.1	Bra036183.1-P	AT5G48170.1	15161962
AT1G75950.1	Bra037508.1-P	AT5G48170.1	15161962
AT1G75950.1	Bra020625.1-P	AT5G49610.1	14749489
AT1G75950.1	Bra029137.1-P	AT5G52120.1	12795696
AT1G75950.1	Bra002686.1-P	AT5G57900.1	12795696
AT1G75950.1	Bra024392.1-P	AT5G65495.1	12795696
AT1G75950.1	Bra037120.1-P	AT5G67250.1	12169662
AT1G75950.1	Bra037120.1-P	AT5G67250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87650	Canola	cytosol	98.76	98.76
Bra008231.1-P	Field mustard	cytosol	90.68	91.25
Bra003735.1-P	Field mustard	cytosol	90.06	90.62
AT1G75950.1	Thale cress	cytosol	85.71	86.25
Bra018756.1-P	Field mustard	cytosol	67.08	69.23
Bra025795.1-P	Field mustard	cytosol	68.32	68.32
Bra018757.1-P	Field mustard	cytosol	65.84	66.25
Bra014519.1-P	Field mustard	cytosol	62.11	62.89
Bra014159.1-P	Field mustard	cytosol	60.87	61.64
Bra012214.1-P	Field mustard	cytosol	49.07	58.96
Bra012216.1-P	Field mustard	cytosol	56.52	56.88
Bra039504.1-P	Field mustard	cytosol	57.14	54.44
Bra012213.1-P	Field mustard	cytosol	50.31	53.29
Bra017397.1-P	Field mustard	cytosol	50.93	51.57

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EnsemblPlantsGene:Bra015801	EnsemblPlants:Bra015801.1	EnsemblPlants:Bra015801.1-P	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M4DH24
PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	InterPro:SKP1
InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382
InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI0002541FF3	SEG:seg	:	:

Description

AT1G75950 (E=1e-064) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase

Coordinates

chrA07:+:20796284..20797140

Molecular Weight (calculated)

17942.0 Da

IEP (calculated)

4.155

GRAVY (calculated)

-0.456

Length

161 amino acids

Sequence
(BLAST)

001: MSTKKIVLKS SDAESFEVDE AVARESQTLA HMVEDDCTDN GIPLPNVTGK ILAKVIEYCK KHVDAAAAKT EATADGGAPS DEDLKAWDAE FMNIDQATLF
101: ELILAANYLN IKNLLDLTCQ TVPDMIKGKT PDEIRTTFNI KNDFSPEEEE EVRRENQWAF E

Best Arabidopsis Sequence Match ( AT1G75950.1 )
(BLAST)

001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE

Arabidopsis Description

SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.