Factsheet for Bra017407.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02870.1	Bra003735.1-P	AT1G75950.1	12795696
AT2G02870.1	Bra008231.1-P	AT1G75950.1	12795696
AT2G02870.1	Bra015801.1-P	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17425	Canola	cytosol	87.47	95.76
CDY60836	Canola	cytosol	82.0	94.74
Bra024801.1-P	Field mustard	nucleus	89.29	86.53
AT2G02870.1	Thale cress	nucleus	90.43	85.01
Bra026575.1-P	Field mustard	nucleus	85.88	84.91
Bra026838.1-P	Field mustard	nucleus	71.3	76.9
Solyc04g005870.1.1	Tomato	cytosol	7.97	66.04
Solyc04g005670.1.1	Tomato	cytosol	59.0	64.11
TraesCS4D01G286700.1	Wheat	cytosol	47.38	63.03
PGSC0003DMT400007346	Potato	nucleus	61.05	61.89
Bra016297.1-P	Field mustard	cytosol	58.54	60.33
TraesCS4A01G493800.1	Wheat	cytosol	34.4	60.16
GSMUA_Achr4P09990_001	Banana	cytosol	56.49	57.81
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	55.13	56.94
TraesCS6A01G306000.1	Wheat	cytosol	54.67	56.47
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	54.67	56.47
PGSC0003DMT400059324	Potato	cytosol	61.5	56.25
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	54.44	56.24
GSMUA_Achr7P20970_001	Banana	cytosol	50.57	56.2
Zm00001d052253_P001	Maize	cytosol	53.53	55.56
Os02t0748300-01	Rice	cytosol	53.76	55.4
GSMUA_Achr4P00520_001	Banana	cytosol	48.97	55.27
GSMUA_Achr8P01380_001	Banana	cytosol	47.84	55.26
KXG30756	Sorghum	cytosol	53.3	55.06
GSMUA_Achr1P21630_001	Banana	cytosol	47.15	54.91
TraesCS4A01G016200.1	Wheat	cytosol	53.3	54.29
Bra008155.1-P	Field mustard	cytosol	36.67	54.21
TraesCS7A01G004600.1	Wheat	cytosol	44.65	53.85
Os03t0171600-01	Rice	cytosol	52.62	53.6
Bra015905.1-P	Field mustard	cytosol	50.11	53.4
KRH45883	Soybean	cytosol	64.92	52.88
KXG40080	Sorghum	cytosol	51.48	52.8
HORVU4Hr1G075310.1	Barley	cytosol	52.62	52.62
Zm00001d048310_P001	Maize	cytosol	51.25	52.57
Zm00001d027856_P001	Maize	cytosol	51.25	52.45
Bra003796.1-P	Field mustard	cytosol	50.8	52.22
VIT_01s0026g02080.t01	Wine grape	nucleus	64.24	52.13
KRH74828	Soybean	cytosol	63.55	51.96
KRG99114	Soybean	cytosol	63.78	51.95
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	52.39	51.92
OQU91835	Sorghum	cytosol, nucleus, plastid	51.94	51.35
TraesCS7D01G007100.1	Wheat	cytosol	43.51	51.34
KRH70694	Soybean	cytosol	62.87	51.21
TraesCS7D01G005100.1	Wheat	cytosol	25.06	51.16
Zm00001d033012_P001	Maize	cytosol	51.25	50.45
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	18.0	50.0
GSMUA_Achr8P17960_001	Banana	nucleus	46.92	49.52
GSMUA_Achr10P...	Banana	nucleus	48.06	48.51
TraesCS4A01G487800.1	Wheat	cytosol	28.02	47.67
Os11t0602800-01	Rice	nucleus	46.24	46.99
GSMUA_Achr2P14920_001	Banana	mitochondrion	50.11	46.03
Zm00001d048898_P001	Maize	cytosol	45.33	45.75
HORVU2Hr1G057150.1	Barley	cytosol	19.13	45.16
HORVU2Hr1G057140.1	Barley	cytosol	19.13	45.16
Zm00001d007596_P001	Maize	nucleus, plastid	45.33	45.12
OQU83795	Sorghum	cytosol	45.33	44.62
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	38.72	44.16
TraesCS4A01G489300.1	Wheat	cytosol	38.27	44.09
TraesCS4A01G489600.1	Wheat	cytosol	37.81	43.92
GSMUA_Achr3P01570_001	Banana	golgi	47.15	42.33
PGSC0003DMT400007391	Potato	cytosol	12.76	41.79
GSMUA_Achr4P24130_001	Banana	nucleus	49.2	41.78
Bra002471.1-P	Field mustard	cytosol	35.54	41.6
Solyc05g007220.2.1	Tomato	nucleus	58.77	40.06
HORVU7Hr1G000010.5	Barley	cytosol	39.41	39.5
Bra032052.1-P	Field mustard	cytosol	15.26	38.07
HORVU7Hr1G000070.1	Barley	cytosol	41.23	34.48
Bra032983.1-P	Field mustard	cytosol	30.52	32.6
TraesCS4A01G491100.1	Wheat	cytosol	38.95	32.51
Bra025251.1-P	Field mustard	cytosol	30.3	30.72
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	32.8	30.38
Bra034944.1-P	Field mustard	cytosol	26.88	28.85
Bra010784.1-P	Field mustard	cytosol	25.97	28.72
Bra003447.1-P	Field mustard	cytosol	16.4	20.06
Bra033998.1-P	Field mustard	cytosol	16.17	19.61
Bra004227.1-P	Field mustard	cytosol	16.63	19.57
Bra001739.1-P	Field mustard	cytosol	15.26	19.36
Bra031360.1-P	Field mustard	plastid	10.48	18.85
Bra012304.1-P	Field mustard	cytosol	20.05	18.84
Bra010942.1-P	Field mustard	plastid	14.81	18.84
Bra037535.1-P	Field mustard	cytosol	14.81	18.73
Bra011908.1-P	Field mustard	mitochondrion	18.45	18.62
Bra032358.1-P	Field mustard	mitochondrion, plastid	16.86	18.59
Bra030872.1-P	Field mustard	cytosol	18.22	18.39
Bra026073.1-P	Field mustard	cytosol	8.66	18.36
Bra037989.1-P	Field mustard	cytosol, plastid	18.0	18.16
Bra007843.1-P	Field mustard	cytosol	14.35	16.94
Bra005497.1-P	Field mustard	cytosol	5.01	15.28
Bra030046.1-P	Field mustard	cytosol, plastid	11.16	13.88
Bra030045.1-P	Field mustard	cytosol	14.35	13.38

Protein Annotations

EnsemblPlants:Bra017407.1	EnsemblPlants:Bra017407.1-P	EnsemblPlantsGene:Bra017407	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF138
PFAM:PF01344	SEG:seg	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI00025422BB	UniProt:M4DLM6
MapMan:35.1	:	:	:	:	:

Description

AT2G02870 (E=3e-188) | kelch repeat-containing F-box family protein

Coordinates

chrA09:-:15047278..15048597

Molecular Weight (calculated)

48404.3 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.372

Length

439 amino acids

Sequence
(BLAST)

001: MLENRSPDSC LSSRVFSSSR VSYKLTNGKR ALEAVGGEIR PTKSLKLMGF CITYDSDSSD YSLSGDGSQD QSDSNNNGGD SSDSHSLFNE IGRDSSIDCL
101: LRCSRSDYGS IASLNRNFRS LVKSGDIYKL RKQNGFVEHW VYFSCQLLEW VAFDPVERKW MKLPTMPSSV TFMCADKESL AVGTDLLVLG KDGFSSHVIY
201: RYSLLTNSWS SGMEMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWVSL PRMNKPRKMC SGVFMDGKFY VIGGIGGAES KALTCGEEYD
301: LETKKWTPIP DLSPPRSRAE QDGNGMPPAA EAPPLVAVVD NQLYAADHAD MEVRKYDKEK KKWLTIGRLP ERAGSVNGWG LAFRACGERL IVIGGPKYSG
401: GGFIELNSWV PRDGSPPQWT LLDRKHSPNF VYNCAVMGC

Best Arabidopsis Sequence Match ( AT2G02870.2 )
(BLAST)

001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC

Arabidopsis Description

SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.