Factsheet for GSMUA_Achr4P24130_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P14920_001	Banana	mitochondrion	70.41	76.15
GSMUA_Achr1P21630_001	Banana	cytosol	54.55	74.8
GSMUA_Achr8P01380_001	Banana	cytosol	54.93	74.74
GSMUA_Achr8P17960_001	Banana	nucleus	58.03	72.12
GSMUA_Achr10P...	Banana	nucleus	58.22	69.2
TraesCS4D01G286700.1	Wheat	cytosol	43.13	67.58
GSMUA_Achr4P00520_001	Banana	cytosol	48.16	64.01
GSMUA_Achr7P20970_001	Banana	cytosol	48.74	63.8
CDY33755	Canola	cytosol	14.89	62.6
TraesCS4A01G493800.1	Wheat	cytosol	29.98	61.75
GSMUA_Achr4P09990_001	Banana	cytosol	50.68	61.07
GSMUA_Achr3P01570_001	Banana	golgi	56.67	59.92
KXG40080	Sorghum	cytosol	47.97	57.94
Os03t0171600-01	Rice	cytosol	48.16	57.77
Zm00001d027856_P001	Maize	cytosol	47.58	57.34
TraesCS7A01G004600.1	Wheat	cytosol	40.23	57.14
Zm00001d048310_P001	Maize	cytosol	47.2	57.01
TraesCS4A01G016200.1	Wheat	cytosol	47.39	56.84
Solyc04g005870.1.1	Tomato	cytosol	5.8	56.6
HORVU4Hr1G075310.1	Barley	cytosol	47.58	56.04
TraesCS7D01G007100.1	Wheat	cytosol	39.46	54.84
VIT_17s0000g05920.t01	Wine grape	cytosol	46.81	54.63
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	46.62	54.4
OQU91835	Sorghum	cytosol, nucleus, plastid	46.03	53.6
Zm00001d033012_P001	Maize	cytosol	45.65	52.91
Bra026838.1-P	Field mustard	nucleus	41.59	52.83
CDX81631	Canola	nucleus	41.78	52.81
CDY62015	Canola	nucleus	42.17	52.53
Solyc04g005670.1.1	Tomato	cytosol	40.81	52.23
KRH63378	Soybean	cytosol	44.29	51.93
PGSC0003DMT400007346	Potato	nucleus	43.33	51.73
KRH54527	Soybean	cytosol	43.71	51.25
AT1G14330.1	Thale cress	nucleus	43.71	51.25
CDY49094	Canola	nucleus	41.78	50.94
CDY60836	Canola	cytosol	37.33	50.79
TraesCS7D01G005100.1	Wheat	cytosol	20.89	50.23
TraesCS4A01G487800.1	Wheat	cytosol	24.95	50.0
Os11t0602800-01	Rice	nucleus	41.78	50.0
Solyc03g113010.1.1	Tomato	cytosol	41.97	49.21
Bra017407.1-P	Field mustard	nucleus, plastid	41.78	49.2
CDY09349	Canola	nucleus	42.17	49.1
Bra026575.1-P	Field mustard	nucleus	42.17	49.1
KRH03453	Soybean	cytosol	38.68	49.02
CDY17425	Canola	cytosol	37.91	48.88
CDY62176	Canola	nucleus	41.97	48.55
PGSC0003DMT400046591	Potato	extracellular	42.55	48.25
AT2G02870.1	Thale cress	nucleus	43.33	47.97
CDY03028	Canola	cytosol	41.59	47.88
CDY45190	Canola	nucleus	41.78	47.68
Bra024801.1-P	Field mustard	nucleus	41.78	47.68
Zm00001d007596_P001	Maize	nucleus, plastid	40.62	47.62
KRH56929	Soybean	cytosol	36.94	46.93
HORVU2Hr1G057140.1	Barley	cytosol	16.83	46.77
HORVU2Hr1G057150.1	Barley	cytosol	16.83	46.77
OQU83795	Sorghum	cytosol	40.23	46.64
AT1G26930.1	Thale cress	cytosol	37.91	46.56
Zm00001d048898_P001	Maize	cytosol	39.07	46.44
TraesCS4A01G489600.1	Wheat	cytosol	33.66	46.03
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	34.24	45.97
TraesCS4A01G489300.1	Wheat	cytosol	33.85	45.93
CDY46430	Canola	cytosol	37.52	45.54
PGSC0003DMT400059324	Potato	cytosol	42.17	45.42
CDY52764	Canola	cytosol	37.33	45.41
Bra016297.1-P	Field mustard	cytosol	37.33	45.31
CDY16205	Canola	nucleus	36.75	44.92
CDY33754	Canola	nucleus	21.47	44.4
VIT_01s0026g02080.t01	Wine grape	nucleus	45.84	43.81
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	33.46	42.93
KRG99114	Soybean	cytosol	43.71	41.93
KRH45883	Soybean	cytosol	43.71	41.93
HORVU7Hr1G000010.5	Barley	cytosol	35.4	41.78
KRH70694	Soybean	cytosol	43.52	41.74
KRH74828	Soybean	cytosol	43.33	41.71
GSMUA_Achr9P30470_001	Banana	cytosol	28.63	37.85
PGSC0003DMT400007391	Potato	cytosol	9.67	37.31
GSMUA_Achr11P...	Banana	cytosol	31.14	36.59
HORVU7Hr1G000070.1	Barley	cytosol	36.75	36.19
TraesCS4A01G491100.1	Wheat	cytosol	35.59	34.98
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	10.44	34.18
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	30.95	33.76
Solyc05g007220.2.1	Tomato	nucleus	41.01	32.92
GSMUA_Achr4P20790_001	Banana	extracellular	13.73	18.83
GSMUA_Achr6P24370_001	Banana	cytosol	12.57	18.73
GSMUA_Achr6P04050_001	Banana	cytosol	16.44	18.68
GSMUA_Achr7P27010_001	Banana	cytosol	14.12	17.55
GSMUA_Achr7P08330_001	Banana	cytosol	13.35	17.51
GSMUA_Achr3P29560_001	Banana	cytosol	13.73	17.27
GSMUA_Achr8P28270_001	Banana	cytosol	12.57	16.93
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	13.15	16.67
GSMUA_Achr10P...	Banana	cytosol	16.63	16.54
GSMUA_AchrUn_...	Banana	cytosol	11.41	16.53
GSMUA_Achr2P22090_001	Banana	cytosol	11.8	16.18
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	11.8	15.97
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	11.8	15.64
GSMUA_Achr6P31190_001	Banana	mitochondrion	11.41	14.36
GSMUA_Achr2P18470_001	Banana	cytosol	10.64	12.91
GSMUA_Achr4P03630_001	Banana	plasma membrane	13.15	8.01

Protein Annotations

EnsemblPlants:GSMUA_Achr4P24130_001	EnsemblPlants:GSMUA_Achr4T24130_001	EnsemblPlantsGene:GSMUA_Achr4G24130_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	ncoils:Coil	PANTHER:PTHR24413
PANTHER:PTHR24413:SF133	PFAM:PF01344	SEG:seg	SUPFAM:SSF117281	UniParc:UPI0002956B0F	UniProt:M0SRM4
MapMan:35.1	:	:	:	:	:

Description

F-box/kelch-repeat protein SKIP11 [Source:GMGC_GENE;Acc:GSMUA_Achr4G24130_001]

Coordinates

chr4:-:24043863..24046565

Molecular Weight (calculated)

59014.3 Da

IEP (calculated)

9.771

GRAVY (calculated)

-0.427

Length

517 amino acids

Sequence
(BLAST)

001: MYILANKKVK KQEERIKLWN KKFKETENLV DKVIKNGVRK KLLRVKMPGR RRRRRRRERS LFSEKGLSFH LFTRLSVPSP LDSPNRSVSS LPSFDISISL
101: DPLCLYQKKP IMLDGRSYLI SRSFRSSREQ ESNWHCMDCY FHESSGNKKR RLDEKFEERQ LEGQVKMNRS PQQPETPDIK DMELPLDGPY HHRSDGKYSD
201: SNIVSRLGRE LIISCLLHLS RSDYGAVASL NRMFRSLIHS GELYQLRRKM DIIEHWVYFS CSIHEWDAYD PYRERWIMVP KMPPTESFMC SDKESLAVGT
301: ELLVFGKEVN SHIVLRYSIL TNSWSPGVVM NSPRCLFGSA SLGVKAIIAG GINAQARKMC SGVFMDGKFY VIGGMASNTK VLTCGEEYDL ERRSWRVIPD
401: MSSGLNGASG APPLVAVVNN ELYAAHYADK ELRKYNKVNN TWVGLGRLPE SCVSMNGWGL AFRACGERLI VIGGTRDSFG GMIELNSWIP NGEPPVWNMI
501: ASKHSGNFVY NCAVMGC

Best Arabidopsis Sequence Match ( AT1G14330.1 )
(BLAST)

001: MVEDRTYLMS RIFSSSRLSE SKWPYMYPQP EDSSESNLIN GKRALENDVD ELRQSKSPRL MGFSIHGNEA IEEDEQEQDQ SDSNNNGNSD GDSLINDIGR
101: DNSISCLIRC SRSGYGSIAS LNRSFRSLVK TGEIYRLRRQ NQIVEHWVYF SCQLLEWVAF NPFERRWMNL PTMPSGVTFM CADKESLAVG TDLLVLGKDD
201: YSSHVIYRYS LLTNSWSSGM RMNSPRCLFG SASLGEIAIF AGGFDSFGKI SDSAEMYNSE LQTWTTLPKM NKPRKMCSGV FMDGKFYVIG GIGGNDSKVL
301: TCGEEFDLET KKWTEIPEMS PPRSREMPAA AEAPPLVAVV NNELYAADHA DMEVRKYDKE SKKWFTLGRL PERADSVNGW GLAFRACGER LIVIGGPRSS
401: GGGYIELNSW IPSSDRSPPL WTLLGRKHSS NFVYNCAVMG C

Arabidopsis Description

At1g14330/F14L17_7 [Source:UniProtKB/TrEMBL;Acc:Q9M9S9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.