Factsheet for Solyc05g007220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059324	Potato	cytosol	63.66	85.42
Solyc04g005670.1.1	Tomato	cytosol	46.43	74.01
Solyc04g005870.1.1	Tomato	cytosol	5.59	67.92
CDY33755	Canola	cytosol	12.89	67.48
CDY62015	Canola	nucleus	40.37	62.65
Bra026838.1-P	Field mustard	nucleus	38.98	61.67
TraesCS4D01G286700.1	Wheat	cytosol	31.52	61.52
CDX81631	Canola	nucleus	38.82	61.12
CDY49094	Canola	nucleus	40.22	61.08
AT1G14330.1	Thale cress	nucleus	41.61	60.77
CDY60836	Canola	cytosol	34.94	59.21
AT2G02870.1	Thale cress	nucleus	42.86	59.1
Bra026575.1-P	Field mustard	nucleus	40.68	59.01
CDY09349	Canola	nucleus	40.53	58.78
Bra017407.1-P	Field mustard	nucleus, plastid	40.06	58.77
AT1G26930.1	Thale cress	cytosol	38.2	58.43
CDY17425	Canola	cytosol	36.34	58.35
CDY03028	Canola	cytosol	40.53	58.13
CDY45190	Canola	nucleus	40.84	58.06
Bra024801.1-P	Field mustard	nucleus	40.84	58.06
Solyc03g113010.1.1	Tomato	cytosol	39.75	58.05
CDY62176	Canola	nucleus	40.22	57.94
CDY46430	Canola	cytosol	37.89	57.28
Bra016297.1-P	Field mustard	cytosol	37.89	57.28
CDY52764	Canola	cytosol	37.73	57.18
TraesCS4A01G493800.1	Wheat	cytosol	22.2	56.97
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	36.96	56.0
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	36.96	56.0
CDY16205	Canola	nucleus	36.65	55.79
TraesCS6A01G306000.1	Wheat	cytosol	36.8	55.76
GSMUA_Achr4P09990_001	Banana	cytosol	37.11	55.71
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	36.65	55.53
Zm00001d052253_P001	Maize	cytosol	36.34	55.32
KRH45883	Soybean	cytosol	46.27	55.29
KRG99114	Soybean	cytosol	45.65	54.55
VIT_01s0026g02080.t01	Wine grape	nucleus	45.65	54.34
Os02t0748300-01	Rice	cytosol	35.87	54.23
KRH74828	Soybean	cytosol	45.19	54.19
KXG30756	Sorghum	cytosol	35.71	54.12
GSMUA_Achr1P21630_001	Banana	cytosol	31.68	54.11
Os03t0171600-01	Rice	cytosol	36.18	54.06
GSMUA_Achr8P01380_001	Banana	cytosol	31.68	53.68
KRH70694	Soybean	cytosol	44.72	53.43
Solyc11g069320.1.1	Tomato	plastid	18.01	53.21
CDY33754	Canola	nucleus	20.5	52.8
Zm00001d048310_P001	Maize	cytosol	34.78	52.34
TraesCS4A01G016200.1	Wheat	cytosol	34.94	52.2
GSMUA_Achr7P20970_001	Banana	cytosol	31.99	52.15
KXG40080	Sorghum	cytosol	34.63	52.1
TraesCS7A01G004600.1	Wheat	cytosol	29.35	51.92
Zm00001d027856_P001	Maize	cytosol	34.47	51.75
HORVU4Hr1G075310.1	Barley	cytosol	35.09	51.48
GSMUA_Achr4P00520_001	Banana	cytosol	31.06	51.41
TraesCS7D01G007100.1	Wheat	cytosol	29.19	50.54
OQU91835	Sorghum	cytosol, nucleus, plastid	34.32	49.77
TraesCS7D01G005100.1	Wheat	cytosol	16.61	49.77
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	33.85	49.21
Zm00001d033012_P001	Maize	cytosol	34.01	49.1
Os11t0602800-01	Rice	nucleus	32.92	49.07
GSMUA_Achr8P17960_001	Banana	nucleus	31.68	49.04
GSMUA_Achr10P...	Banana	nucleus	32.14	47.59
Zm00001d048898_P001	Maize	cytosol	32.14	47.59
TraesCS4A01G487800.1	Wheat	cytosol	18.94	47.29
GSMUA_Achr2P14920_001	Banana	mitochondrion	34.47	46.44
Zm00001d007596_P001	Maize	nucleus, plastid	31.52	46.03
HORVU2Hr1G057140.1	Barley	cytosol	13.2	45.7
HORVU2Hr1G057150.1	Barley	cytosol	13.2	45.7
OQU83795	Sorghum	cytosol	31.52	45.52
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	26.24	43.9
TraesCS4A01G489600.1	Wheat	cytosol	25.47	43.39
TraesCS4A01G489300.1	Wheat	cytosol	25.62	43.31
GSMUA_Achr4P24130_001	Banana	nucleus	32.92	41.01
GSMUA_Achr3P01570_001	Banana	golgi	30.9	40.7
HORVU7Hr1G000010.5	Barley	cytosol	26.4	38.81
HORVU7Hr1G000070.1	Barley	cytosol	28.11	34.48
TraesCS4A01G491100.1	Wheat	cytosol	27.48	33.65
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	22.36	30.38
Solyc07g009410.2.1	Tomato	cytosol	16.93	24.44
Solyc09g065400.1.1	Tomato	cytosol	11.02	20.58
Solyc06g008690.1.1	Tomato	cytosol	10.71	20.0
Solyc01g005970.2.1	Tomato	cytosol	13.51	19.91
Solyc01g104980.2.1	Tomato	cytosol, plastid	14.44	19.58
Solyc01g022740.2.1	Tomato	cytosol	13.2	19.45
Solyc07g042960.1.1	Tomato	cytosol, mitochondrion	5.28	19.32
Solyc01g094520.2.1	Tomato	nucleus	11.65	18.8
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	10.56	16.92
Solyc07g042950.1.1	Tomato	cytosol	4.19	15.17

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625
GO:GO:0042787	GO:GO:0043161	InterPro:IPR015915	UniProt:K4BWP8	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF138	SMART:SM00612	SUPFAM:SSF117281	EnsemblPlantsGene:Solyc05g007220.2
EnsemblPlants:Solyc05g007220.2.1	UniParc:UPI0002765A9C	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:1860323..1862631

Molecular Weight (calculated)

69844.6 Da

IEP (calculated)

4.018

GRAVY (calculated)

-0.508

Length

644 amino acids

Sequence
(BLAST)

001: MLEDRTCMVQ RDCLTENNWT TGCMSYHIDR IDAQNGKRPL ENDEEGVNVQ CKLQKQSDGS ELDGGVFSVG NSSASADEQA DNQARAVENF NSAIADEQAD
101: NQAHAVENFN SAIADEQADN QARAVENIDS ASADMQANNQ ARAVEKIDSA RAGEYFNSAS DDEQADNQVL TWEDFDSASD DEQADNEARA GDYFDSDDEQ
201: ADNQALAWED FDSASDDEQA DNQALAWEDF VSASDDEQAD NEARAGKNFG SASADEQADN KGHAEDDSAA APPDEQAGNQ HQTGDDAGDN ADISSLIPAI
301: GRDNSVSSLA WCSRSDYSTL ASLNSAFRSL VRSDELYRLR RKIGVVEHWV YFSCQLLEWD AFDPNRRRWM KLPTMNPNEC FVFSDKESLA VGTELLVFGK
401: EVLSHVIYRY SLLTNTWTTG MQMNAPRCLF GSASLGAIAI LAGGCDSRGI ILSSAEIYNS EDGSWRVLPS MNRPRKMCSG VFMDGKFYVI GGIGGADGTL
501: MTCAEEYDLT TGKWTEIPNM SPVRPNAGRT DIPASSEAPP LVGVVNNELY SADYAAMVVR KFDKSSKTWV TMGGLPEGAA SMNGWGLAFR ACGDRLIVVG
601: GPRAMGDGYI GVNSWVPSEG PPVWTLLGSK SSGTFVYNCA VMGC

Best Arabidopsis Sequence Match ( AT2G02870.2 )
(BLAST)

001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC

Arabidopsis Description

SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.