Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G286700.1 | Wheat | cytosol | 75.87 | 99.09 |
| HORVU4Hr1G075310.1 | Barley | cytosol | 97.22 | 95.44 |
| Os03t0171600-01 | Rice | cytosol | 86.54 | 86.54 |
| KXG40080 | Sorghum | cytosol | 83.99 | 84.58 |
| Zm00001d048310_P001 | Maize | cytosol | 82.13 | 82.71 |
| TraesCS4A01G493800.1 | Wheat | cytosol | 47.8 | 82.07 |
| Zm00001d027856_P001 | Maize | cytosol | 81.67 | 82.05 |
| TraesCS7A01G004600.1 | Wheat | cytosol | 64.73 | 76.65 |
| TraesCS4A01G487800.1 | Wheat | cytosol | 38.52 | 64.34 |
| GSMUA_Achr8P01380_001 | Banana | cytosol | 55.45 | 62.89 |
| GSMUA_Achr1P21630_001 | Banana | cytosol | 54.06 | 61.8 |
| CDY33755 | Canola | cytosol | 17.4 | 60.98 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 60.09 | 60.94 |
| TraesCS4A01G489300.1 | Wheat | cytosol | 53.13 | 60.1 |
| TraesCS4A01G489600.1 | Wheat | cytosol | 52.67 | 60.05 |
| TraesCS4A01G492300.1 | Wheat | cytosol, golgi, plastid | 53.6 | 60.0 |
| VIT_17s0000g05920.t01 | Wine grape | cytosol | 58.7 | 57.11 |
| GSMUA_Achr8P17960_001 | Banana | nucleus | 54.76 | 56.73 |
| CDY62015 | Canola | nucleus | 54.06 | 56.14 |
| GSMUA_Achr10P... | Banana | nucleus | 56.38 | 55.86 |
| Bra026838.1-P | Field mustard | nucleus | 52.67 | 55.77 |
| CDX81631 | Canola | nucleus | 52.67 | 55.5 |
| KRH54527 | Soybean | cytosol | 56.15 | 54.88 |
| CDY60836 | Canola | cytosol | 48.26 | 54.74 |
| CDY49094 | Canola | nucleus | 53.83 | 54.72 |
| KRH63378 | Soybean | cytosol | 55.68 | 54.42 |
| Solyc04g005670.1.1 | Tomato | cytosol | 50.81 | 54.21 |
| Solyc03g113010.1.1 | Tomato | cytosol | 54.99 | 53.74 |
| Bra026575.1-P | Field mustard | nucleus | 55.22 | 53.6 |
| PGSC0003DMT400007346 | Potato | nucleus | 53.83 | 53.58 |
| Bra017407.1-P | Field mustard | nucleus, plastid | 54.29 | 53.3 |
| CDY62176 | Canola | nucleus | 55.22 | 53.24 |
| CDY09349 | Canola | nucleus | 54.76 | 53.15 |
| CDY17425 | Canola | cytosol | 49.42 | 53.12 |
| AT1G14330.1 | Thale cress | nucleus | 54.29 | 53.06 |
| Solyc04g005870.1.1 | Tomato | cytosol | 6.5 | 52.83 |
| AT1G26930.1 | Thale cress | cytosol | 51.51 | 52.73 |
| KRH03453 | Soybean | cytosol | 49.88 | 52.7 |
| GSMUA_Achr2P14920_001 | Banana | mitochondrion | 58.24 | 52.51 |
| CDY03028 | Canola | cytosol | 54.29 | 52.12 |
| Bra024801.1-P | Field mustard | nucleus | 54.52 | 51.88 |
| CDY45190 | Canola | nucleus | 54.52 | 51.88 |
| PGSC0003DMT400046591 | Potato | extracellular | 54.76 | 51.75 |
| CDY16205 | Canola | nucleus | 50.35 | 51.3 |
| AT2G02870.1 | Thale cress | nucleus | 55.45 | 51.18 |
| CDY46430 | Canola | cytosol | 50.35 | 50.94 |
| CDY52764 | Canola | cytosol | 50.12 | 50.82 |
| Bra016297.1-P | Field mustard | cytosol | 50.12 | 50.7 |
| KRH56929 | Soybean | cytosol | 47.8 | 50.61 |
| PGSC0003DMT400059324 | Potato | cytosol | 54.52 | 48.96 |
| CDY33754 | Canola | nucleus | 28.07 | 48.4 |
| GSMUA_Achr3P01570_001 | Banana | golgi | 54.76 | 48.26 |
| GSMUA_Achr4P24130_001 | Banana | nucleus | 56.84 | 47.39 |
| KRH45883 | Soybean | cytosol | 56.84 | 45.45 |
| KRG99114 | Soybean | cytosol | 56.61 | 45.27 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 56.61 | 45.1 |
| TraesCS4A01G491100.1 | Wheat | cytosol | 54.06 | 44.3 |
| KRH74828 | Soybean | cytosol | 54.99 | 44.13 |
| KRH70694 | Soybean | cytosol | 54.99 | 43.97 |
| TraesCS2A01G462600.1 | Wheat | cytosol | 45.48 | 43.65 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 14.62 | 39.87 |
| TraesCS4A01G493200.1 | Wheat | cytosol, plasma membrane | 42.92 | 39.03 |
| PGSC0003DMT400007391 | Potato | cytosol | 11.14 | 35.82 |
| Solyc05g007220.2.1 | Tomato | nucleus | 52.2 | 34.94 |
| TraesCS3A01G534600.1 | Wheat | cytosol | 22.27 | 22.27 |
| TraesCS4A01G020200.1 | Wheat | cytosol | 20.88 | 20.93 |
| TraesCS6A01G175700.1 | Wheat | plastid | 19.72 | 20.09 |
| TraesCS3A01G446400.1 | Wheat | cytosol, plastid | 17.87 | 20.0 |
| TraesCS4A01G472100.1 | Wheat | cytosol | 20.88 | 19.65 |
| TraesCS6A01G037900.1 | Wheat | cytosol | 16.47 | 19.56 |
| TraesCS2A01G499700.1 | Wheat | cytosol, mitochondrion | 17.87 | 19.35 |
| TraesCS2A01G280900.1 | Wheat | mitochondrion | 17.17 | 19.32 |
| TraesCS7A01G020100.1 | Wheat | cytosol, plastid | 20.42 | 19.3 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 13.23 | 18.51 |
| TraesCS5A01G544300.1 | Wheat | extracellular, plasma membrane | 11.6 | 17.48 |
| TraesCS7A01G496600.1 | Wheat | cytosol | 15.55 | 17.4 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G016200.1 | EnsemblPlantsGene:TraesCS4A01G016200 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF133 | PFAM:PF01344 |
| SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4A:-:10637275..10638570
Molecular Weight (calculated)
47195.6 Da
IEP (calculated)
5.734
GRAVY (calculated)
-0.341
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLEGKSCLV SRSLPSYCDP DSDWAFLLSG TKRSAPEDFG AEDMEEVDAG GSSGKRSKSP SPQPHTPDIT ESHGSSRHAS SGSGGGEQQG SGANLIGEIG
101: RDLSINCLLR LSRSDYGSVA SLNRDFNSLV RNGEIYRLRR QNGFAEHWVY FSCNVLEWDA YDPYRERWIQ VPKMPPDECF MCSDKESLAV GTELLVFGMA
201: HIVFRYSILT NSWTRADPMN SPRCLFGSTS VGEKAYVAGG TDASGKILSS AEMYDSVTHT WTPLPSMNRA RKMCSGVFLD GKFYVIGGVT NNNQVLTCGE
301: EYDLNRGSWR VIENMSEGLN GVTGAPPLIA VVNNQLYAAD YSEKDVKKYD KLNNKWIALG KLPERSVSMN GWGLAFRACG DRLIVIGGPR TSIGGIIELN
401: SWVPDGQPPV WNLVATRQSG NFVYNCAVMG C
101: RDLSINCLLR LSRSDYGSVA SLNRDFNSLV RNGEIYRLRR QNGFAEHWVY FSCNVLEWDA YDPYRERWIQ VPKMPPDECF MCSDKESLAV GTELLVFGMA
201: HIVFRYSILT NSWTRADPMN SPRCLFGSTS VGEKAYVAGG TDASGKILSS AEMYDSVTHT WTPLPSMNRA RKMCSGVFLD GKFYVIGGVT NNNQVLTCGE
301: EYDLNRGSWR VIENMSEGLN GVTGAPPLIA VVNNQLYAAD YSEKDVKKYD KLNNKWIALG KLPERSVSMN GWGLAFRACG DRLIVIGGPR TSIGGIIELN
401: SWVPDGQPPV WNLVATRQSG NFVYNCAVMG C
001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
Arabidopsis Description
SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.