Factsheet for Bra024801.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02870.1	Bra003735.1-P	AT1G75950.1	12795696
AT2G02870.1	Bra008231.1-P	AT1G75950.1	12795696
AT2G02870.1	Bra015801.1-P	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45190	Canola	nucleus	99.56	99.56
CDY03028	Canola	cytosol	97.57	98.44
Bra017407.1-P	Field mustard	nucleus, plastid	86.53	89.29
Bra026575.1-P	Field mustard	nucleus	85.65	87.39
AT2G02870.1	Thale cress	nucleus	90.07	87.37
Bra026838.1-P	Field mustard	nucleus	70.2	78.13
Solyc04g005870.1.1	Tomato	cytosol	7.51	64.15
Solyc04g005670.1.1	Tomato	cytosol	56.73	63.61
TraesCS4D01G286700.1	Wheat	cytosol	45.92	63.03
PGSC0003DMT400007346	Potato	nucleus	59.82	62.59
Bra016297.1-P	Field mustard	cytosol	57.84	61.5
TraesCS4A01G493800.1	Wheat	cytosol	33.33	60.16
GSMUA_Achr4P09990_001	Banana	cytosol	54.3	57.34
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	53.64	57.18
PGSC0003DMT400059324	Potato	cytosol	60.49	57.08
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	53.2	56.71
TraesCS6A01G306000.1	Wheat	cytosol	53.2	56.71
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	53.2	56.71
GSMUA_Achr7P20970_001	Banana	cytosol	49.01	56.2
Zm00001d052253_P001	Maize	cytosol	52.1	55.79
Os02t0748300-01	Rice	cytosol	52.32	55.63
KXG30756	Sorghum	cytosol	51.88	55.29
GSMUA_Achr4P00520_001	Banana	cytosol	47.46	55.27
GSMUA_Achr8P01380_001	Banana	cytosol	45.92	54.74
TraesCS4A01G016200.1	Wheat	cytosol	51.88	54.52
TraesCS7A01G004600.1	Wheat	cytosol	43.71	54.4
GSMUA_Achr1P21630_001	Banana	cytosol	45.25	54.38
Os03t0171600-01	Rice	cytosol	51.66	54.29
KXG40080	Sorghum	cytosol	50.99	53.97
Bra008155.1-P	Field mustard	cytosol	35.1	53.54
HORVU4Hr1G075310.1	Barley	cytosol	51.88	53.53
Zm00001d048310_P001	Maize	cytosol	50.55	53.5
Zm00001d027856_P001	Maize	cytosol	50.33	53.15
Bra015905.1-P	Field mustard	cytosol	47.68	52.43
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	51.21	52.37
KRH45883	Soybean	cytosol	62.03	52.13
VIT_01s0026g02080.t01	Wine grape	nucleus	62.03	51.94
OQU91835	Sorghum	cytosol, nucleus, plastid	50.77	51.8
KRH74828	Soybean	cytosol	61.37	51.77
TraesCS7D01G007100.1	Wheat	cytosol	42.38	51.61
KRG99114	Soybean	cytosol	61.37	51.58
Bra003796.1-P	Field mustard	cytosol	48.57	51.52
KRH70694	Soybean	cytosol	60.93	51.21
TraesCS7D01G005100.1	Wheat	cytosol	24.28	51.16
Zm00001d033012_P001	Maize	cytosol	50.33	51.12
GSMUA_Achr8P17960_001	Banana	nucleus	45.25	49.28
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	16.78	48.1
GSMUA_Achr10P...	Banana	nucleus	46.14	48.05
TraesCS4A01G487800.1	Wheat	cytosol	27.15	47.67
Os11t0602800-01	Rice	nucleus	45.03	47.22
Zm00001d048898_P001	Maize	cytosol	44.37	46.21
GSMUA_Achr2P14920_001	Banana	mitochondrion	48.34	45.82
HORVU2Hr1G057150.1	Barley	cytosol	18.76	45.7
HORVU2Hr1G057140.1	Barley	cytosol	18.76	45.7
Zm00001d007596_P001	Maize	nucleus, plastid	44.15	45.35
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	38.41	45.19
OQU83795	Sorghum	cytosol	44.15	44.84
TraesCS4A01G489300.1	Wheat	cytosol	37.53	44.62
TraesCS4A01G489600.1	Wheat	cytosol	37.09	44.44
GSMUA_Achr3P01570_001	Banana	golgi	45.7	42.33
PGSC0003DMT400007391	Potato	cytosol	12.36	41.79
GSMUA_Achr4P24130_001	Banana	nucleus	47.68	41.78
Bra002471.1-P	Field mustard	cytosol	34.0	41.07
Solyc05g007220.2.1	Tomato	nucleus	58.06	40.84
HORVU7Hr1G000010.5	Barley	cytosol	37.97	39.27
Bra032052.1-P	Field mustard	cytosol	13.91	35.8
HORVU7Hr1G000070.1	Barley	cytosol	39.96	34.48
TraesCS4A01G491100.1	Wheat	cytosol	37.75	32.51
Bra032983.1-P	Field mustard	cytosol	28.7	31.63
Bra025251.1-P	Field mustard	cytosol	29.14	30.48
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	31.79	30.38
Bra010784.1-P	Field mustard	cytosol	24.28	27.71
Bra034944.1-P	Field mustard	cytosol	24.72	27.38
Bra003447.1-P	Field mustard	cytosol	16.11	20.33
Bra026073.1-P	Field mustard	cytosol	9.27	20.29
Bra033998.1-P	Field mustard	cytosol	15.89	19.89
Bra004227.1-P	Field mustard	cytosol	16.11	19.57
Bra010942.1-P	Field mustard	plastid	14.57	19.13
Bra001739.1-P	Field mustard	cytosol	14.57	19.08
Bra037535.1-P	Field mustard	cytosol	14.57	19.02
Bra031360.1-P	Field mustard	plastid	10.15	18.85
Bra011908.1-P	Field mustard	mitochondrion	18.1	18.85
Bra030872.1-P	Field mustard	cytosol	18.1	18.85
Bra012304.1-P	Field mustard	cytosol	19.21	18.63
Bra037989.1-P	Field mustard	cytosol, plastid	17.88	18.62
Bra032358.1-P	Field mustard	mitochondrion, plastid	15.67	17.84
Bra007843.1-P	Field mustard	cytosol	14.35	17.47
Bra005497.1-P	Field mustard	cytosol	5.52	17.36
Bra030046.1-P	Field mustard	cytosol, plastid	11.04	14.16
Bra030045.1-P	Field mustard	cytosol	13.69	13.16

Protein Annotations

EnsemblPlants:Bra024801.1	EnsemblPlants:Bra024801.1-P	EnsemblPlantsGene:Bra024801	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF138
PFAM:PF01344	SEG:seg	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI000253F871	UniProt:M4E7P5
MapMan:35.1	:	:	:	:	:

Description

AT2G02870 (E=7e-187) | kelch repeat-containing F-box family protein

Coordinates

chrA06:-:23507065..23508426

Molecular Weight (calculated)

50236.1 Da

IEP (calculated)

5.237

GRAVY (calculated)

-0.474

Length

453 amino acids

Sequence
(BLAST)

001: MLENRSPDSC LSSRLFSEST WSKSFMFPQD DDDNKLSNGN GNGKKRALEV VGEIRGTKSL KLMGFSITYD SDSSDYSEDG SIQEQEQGDS NTNGGDSSDS
101: HSLINEIGRD NSIDCLIRCS RSDYGSIASL SRNFRSLVKS GDIYKLRRQN GYVEHWVYFS CQLLEWVAFD PVERRWMQLP TMPSSVTFMC ADKESLAVGT
201: DLLVLGKDDF SSHVIYRYSL LTNSWSSGMK MNSPRCLFGS ASLGEIAIFA GGCDSQGKIL DFAEMYNSEL QTWVTLPRMN KPRKMCSGVF MDGKFYVIGG
301: IGGADAKALT CGEEYDLEAK KWTEVPDLSP PRSRADQADA RPAAEAPPLV AVVNNQLYAA DHADMEVRKY DKEKKKWLTI GRLPERAGSG NGWGLAFRAC
401: GERLIVIGGP KYSGGGFIEL NSWTPRDGDP PQWTLLDRKH SPNFVYNCAV MGC

Best Arabidopsis Sequence Match ( AT2G02870.2 )
(BLAST)

001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC

Arabidopsis Description

SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.