Factsheet for Bra032052.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53460	Canola	cytosol	92.05	92.05
Bra034944.1-P	Field mustard	cytosol	72.73	31.3
AT5G40680.1	Thale cress	mitochondrion	65.91	27.95
Bra032983.1-P	Field mustard	cytosol	60.23	25.79
Bra010784.1-P	Field mustard	cytosol	55.68	24.69
Bra025251.1-P	Field mustard	cytosol	60.23	24.48
KRG94518	Soybean	mitochondrion	50.0	21.95
KRH06951	Soybean	cytosol	50.0	21.78
KRH57678	Soybean	cytosol	47.16	21.07
Bra008155.1-P	Field mustard	cytosol	34.66	20.54
PGSC0003DMT400021985	Potato	nucleus	46.59	19.66
VIT_14s0068g02150.t01	Wine grape	cytosol	47.16	17.4
Solyc07g009410.2.1	Tomato	cytosol	41.48	16.37
Bra002471.1-P	Field mustard	cytosol	32.95	15.47
Bra015905.1-P	Field mustard	cytosol	35.8	15.29
Bra017407.1-P	Field mustard	nucleus, plastid	38.07	15.26
Bra003796.1-P	Field mustard	cytosol	36.36	14.99
Bra026575.1-P	Field mustard	nucleus	36.93	14.64
Bra026838.1-P	Field mustard	nucleus	33.52	14.5
Bra016297.1-P	Field mustard	cytosol	34.66	14.32
Bra024801.1-P	Field mustard	nucleus	35.8	13.91
Bra032358.1-P	Field mustard	mitochondrion, plastid	17.05	7.54
Bra012304.1-P	Field mustard	cytosol	19.32	7.28
Bra003447.1-P	Field mustard	cytosol	14.77	7.24
Bra011908.1-P	Field mustard	mitochondrion	17.61	7.13
Bra030872.1-P	Field mustard	cytosol	17.05	6.9
Bra037989.1-P	Field mustard	cytosol, plastid	17.05	6.9
Bra010942.1-P	Field mustard	plastid	13.07	6.67
Bra001739.1-P	Field mustard	cytosol	13.07	6.65
Bra033998.1-P	Field mustard	cytosol	13.64	6.63
Bra037535.1-P	Field mustard	cytosol	13.07	6.63
Bra004227.1-P	Field mustard	cytosol	13.07	6.17
Bra031360.1-P	Field mustard	plastid	8.52	6.15
Bra030045.1-P	Field mustard	cytosol	14.2	5.31
Bra007843.1-P	Field mustard	cytosol	10.8	5.11
Bra030046.1-P	Field mustard	cytosol, plastid	6.82	3.4
Bra026073.1-P	Field mustard	cytosol	0.0	0.0
Bra005497.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra032052.1	EnsemblPlants:Bra032052.1-P	EnsemblPlantsGene:Bra032052	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF160
PFAM:PF01344	SUPFAM:SSF117281	UniParc:UPI0002544D38	UniProt:M4ETC2	MapMan:35.1	:

Description

AT5G40680 (E=3e-062) | kelch repeat-containing F-box family protein

Coordinates

chrA04:-:11216991..11217521

Molecular Weight (calculated)

20056.0 Da

IEP (calculated)

6.409

GRAVY (calculated)

-0.191

Length

176 amino acids

Sequence
(BLAST)

001: MINGMHKTRK FSSECFLRGK FYVLGGRDDN DKHLTCGQSY DETTDSWELI PDMLKDMTVI AHSQSPPLIA VVDDNLYMLE ISLSELRVYD INTNIWKKVG
101: VVPVSANAAF GWGIAFKSMG DRLLVIGTSH SWHRKTVVHS CRPSPDVEEQ HWEEIKHWCV GAELPQFIHN CCVMFA

Best Arabidopsis Sequence Match ( AT5G40680.1 )
(BLAST)

001: MSLMLQKNQA RGTRASLSQF EPRKLLIAST KPTIPDLNAE PCSDSEEEET VENLTSLAPQ DAHNGLPKLM FDLEVEIFSR LSCFQYWKLN LLNKQFSQLL
101: QSREIFKVRR ERGLVQPYVL MFSSGETCWV MFDKGFKNFR QLPEIPSDFC FFYGDKETIT AGTHLIVIGR EEKRIVVWRY ELEVNKWIND TEMITPRVMY
201: ASASRGTDAF FAGGIKTSEN GGPDVVNVAE RYNSDTKTWK AMKAMHKRRK FSSGCFLRGK FYALGGRDEN DVYLTCGESY DELTDSWKLI PDMLKGMTFM
301: NPQSPPLIAV VKDNLYLLET WLNELWVYDI NANVWKNLGV VPVKANAALG WGVAFKSVGD RILVIGASVT KSWDNKMSVY TCCPFPKVEK ITWEETSCDC
401: VQLGHFIRNC CVMLA

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.