Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66938 | Canola | cytosol, mitochondrion | 28.92 | 68.18 |
| Bra032052.1-P | Field mustard | cytosol | 27.95 | 65.91 |
| CDY53460 | Canola | cytosol | 27.71 | 65.34 |
| CDY65956 | Canola | cytosol | 28.67 | 63.3 |
| CDX82682 | Canola | cytosol | 46.99 | 62.3 |
| CDY36146 | Canola | cytosol | 61.93 | 61.63 |
| CDY63005 | Canola | cytosol | 61.45 | 61.15 |
| CDY69929 | Canola | cytosol | 61.2 | 60.91 |
| CDY64780 | Canola | cytosol | 63.13 | 60.37 |
| Bra034944.1-P | Field mustard | cytosol | 57.35 | 58.19 |
| AT3G27150.1 | Thale cress | cytosol | 58.31 | 57.35 |
| CDY12345 | Canola | cytosol | 61.45 | 56.04 |
| CDY49979 | Canola | cytosol | 54.7 | 55.64 |
| Bra010784.1-P | Field mustard | cytosol | 51.33 | 53.65 |
| CDX90239 | Canola | cytosol | 51.33 | 53.65 |
| KRG94518 | Soybean | mitochondrion | 43.13 | 44.64 |
| KRH06951 | Soybean | cytosol | 43.13 | 44.31 |
| KRH57678 | Soybean | cytosol | 41.93 | 44.16 |
| CDY49977 | Canola | cytosol | 48.19 | 42.55 |
| PGSC0003DMT400021985 | Potato | nucleus | 41.93 | 41.73 |
| VIT_14s0068g02150.t01 | Wine grape | cytosol | 44.58 | 38.78 |
| AT1G26930.1 | Thale cress | cytosol | 29.64 | 29.22 |
| Solyc07g009410.2.1 | Tomato | cytosol | 31.33 | 29.15 |
| AT5G60570.2 | Thale cress | cytosol | 27.47 | 29.01 |
| AT1G14330.1 | Thale cress | nucleus | 29.4 | 27.66 |
| AT2G02870.1 | Thale cress | nucleus | 30.12 | 26.77 |
| AT1G74510.2 | Thale cress | cytosol | 27.71 | 25.5 |
| AT1G16250.2 | Thale cress | cytosol | 17.11 | 18.54 |
| AT1G27420.1 | Thale cress | cytosol, plastid | 13.98 | 16.76 |
| AT3G63220.2 | Thale cress | cytosol | 14.22 | 16.76 |
| AT1G30090.1 | Thale cress | mitochondrion, plastid | 15.9 | 16.58 |
| AT1G67480.1 | Thale cress | cytosol, mitochondrion | 14.7 | 16.22 |
| AT1G55270.1 | Thale cress | mitochondrion | 16.39 | 15.67 |
| AT1G22040.1 | Thale cress | plastid | 17.35 | 15.16 |
| AT2G24540.1 | Thale cress | cytosol | 12.53 | 13.98 |
| AT3G61350.2 | Thale cress | cytosol | 11.57 | 13.41 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:834068 | ProteinID:AED94581.1 | ArrayExpress:AT5G40680 | EnsemblPlantsGene:AT5G40680 |
| RefSeq:AT5G40680 | TAIR:AT5G40680 | RefSeq:AT5G40680-TAIR-G | EnsemblPlants:AT5G40680.1 | TAIR:AT5G40680.1 | Unigene:At.55282 |
| ProteinID:BAB08540.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019005 | GO:GO:0019538 | GO:GO:0030162 |
| GO:GO:0031625 | GO:GO:0042787 | GO:GO:0043161 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| RefSeq:NP_198884.1 | PFAM:PF01344 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0001078 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025022 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF160 |
| UniProt:Q9FM30 | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI00000A8E66 | : | : |
Description
Galactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM30]
Coordinates
chr5:+:16288754..16290001
Molecular Weight (calculated)
47390.1 Da
IEP (calculated)
7.224
GRAVY (calculated)
-0.238
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLMLQKNQA RGTRASLSQF EPRKLLIAST KPTIPDLNAE PCSDSEEEET VENLTSLAPQ DAHNGLPKLM FDLEVEIFSR LSCFQYWKLN LLNKQFSQLL
101: QSREIFKVRR ERGLVQPYVL MFSSGETCWV MFDKGFKNFR QLPEIPSDFC FFYGDKETIT AGTHLIVIGR EEKRIVVWRY ELEVNKWIND TEMITPRVMY
201: ASASRGTDAF FAGGIKTSEN GGPDVVNVAE RYNSDTKTWK AMKAMHKRRK FSSGCFLRGK FYALGGRDEN DVYLTCGESY DELTDSWKLI PDMLKGMTFM
301: NPQSPPLIAV VKDNLYLLET WLNELWVYDI NANVWKNLGV VPVKANAALG WGVAFKSVGD RILVIGASVT KSWDNKMSVY TCCPFPKVEK ITWEETSCDC
401: VQLGHFIRNC CVMLA
101: QSREIFKVRR ERGLVQPYVL MFSSGETCWV MFDKGFKNFR QLPEIPSDFC FFYGDKETIT AGTHLIVIGR EEKRIVVWRY ELEVNKWIND TEMITPRVMY
201: ASASRGTDAF FAGGIKTSEN GGPDVVNVAE RYNSDTKTWK AMKAMHKRRK FSSGCFLRGK FYALGGRDEN DVYLTCGESY DELTDSWKLI PDMLKGMTFM
301: NPQSPPLIAV VKDNLYLLET WLNELWVYDI NANVWKNLGV VPVKANAALG WGVAFKSVGD RILVIGASVT KSWDNKMSVY TCCPFPKVEK ITWEETSCDC
401: VQLGHFIRNC CVMLA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.