Factsheet for Bra034944.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65956	Canola	cytosol	40.1	87.23
CDY64780	Canola	cytosol	91.93	86.64
Bra032052.1-P	Field mustard	cytosol	31.3	72.73
AT5G40680.1	Thale cress	mitochondrion	58.19	57.35
Bra010784.1-P	Field mustard	cytosol	54.52	56.17
Bra032983.1-P	Field mustard	cytosol	52.81	52.55
Bra025251.1-P	Field mustard	cytosol	53.79	50.81
KRG94518	Soybean	mitochondrion	39.61	40.4
KRH06951	Soybean	cytosol	39.36	39.85
KRH57678	Soybean	cytosol	38.14	39.59
PGSC0003DMT400021985	Potato	nucleus	39.36	38.61
VIT_14s0068g02150.t01	Wine grape	cytosol	42.79	36.69
Bra008155.1-P	Field mustard	cytosol	22.98	31.65
Bra002471.1-P	Field mustard	cytosol	25.67	28.0
Bra015905.1-P	Field mustard	cytosol	28.12	27.91
Solyc07g009410.2.1	Tomato	cytosol	29.83	27.35
Bra003796.1-P	Field mustard	cytosol	28.36	27.17
Bra017407.1-P	Field mustard	nucleus, plastid	28.85	26.88
Bra026575.1-P	Field mustard	nucleus	28.85	26.58
Bra026838.1-P	Field mustard	nucleus	26.41	26.54
Bra016297.1-P	Field mustard	cytosol	27.14	26.06
Bra024801.1-P	Field mustard	nucleus	27.38	24.72
Bra037535.1-P	Field mustard	cytosol	14.43	17.0
Bra032358.1-P	Field mustard	mitochondrion, plastid	16.14	16.58
Bra011908.1-P	Field mustard	mitochondrion	17.36	16.32
Bra001739.1-P	Field mustard	cytosol	13.45	15.9
Bra030872.1-P	Field mustard	cytosol	16.38	15.4
Bra037989.1-P	Field mustard	cytosol, plastid	16.38	15.4
Bra033998.1-P	Field mustard	cytosol	13.45	15.19
Bra012304.1-P	Field mustard	cytosol	17.11	14.99
Bra031360.1-P	Field mustard	plastid	8.8	14.75
Bra004227.1-P	Field mustard	cytosol	13.45	14.75
Bra026073.1-P	Field mustard	cytosol	7.33	14.49
Bra010942.1-P	Field mustard	plastid	11.98	14.2
Bra007843.1-P	Field mustard	cytosol	12.71	13.98
Bra003447.1-P	Field mustard	cytosol	11.49	13.09
Bra005497.1-P	Field mustard	cytosol	4.4	12.5
Bra030046.1-P	Field mustard	cytosol, plastid	10.51	12.18
Bra030045.1-P	Field mustard	cytosol	12.47	10.83

Protein Annotations

EnsemblPlants:Bra034944.1	EnsemblPlants:Bra034944.1-P	EnsemblPlantsGene:Bra034944	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF160
PFAM:PF01344	SEG:seg	SUPFAM:SSF117281	UniParc:UPI000253E593	UniProt:M4F1J8	MapMan:35.1

Description

AT5G40680 (E=4e-119) | kelch repeat-containing F-box family protein

Coordinates

chrScaffold000100:+:5248..6477

Molecular Weight (calculated)

46966.6 Da

IEP (calculated)

8.526

GRAVY (calculated)

-0.359

Length

409 amino acids

Sequence
(BLAST)

001: MMSKDMAKIN RDMLMLTDDH TPKVGASLSQ SKRRKISIVG IKPSITDLNA KLCYDSDKEE KGEVTNIFQN LAGLKSHDGC YVHHKLLYEL EVEIFARLPC
101: FEYWKLQFLN KFFLQLLKSG EIFRVRQEKG LVKPYVILHS GAGSNWEMFD KDFKTFQRLP KVPSSDYCFF HSDKETICVG TQLIVIGREI EGIVVFRYEL
201: ENHKWFKGPS MITQRVMYGS ASHRKTAFFA GGMQMDDNGN PIVVRTVEKY NADAKSWTMI NGMHKARKFS SGCFLRGKFY VLGGRDENDK HLTCGESYDE
301: TTNSWELIPD MLKDMTFITP SQSPPLIAVV DDNLYMLETS LNELRVYDIN TNIWKKLGVF PVRANTTFGW GTSFKSMGDR LLVVGSSHSW HRKGIVYSCR
401: PSLDVEEQH

Best Arabidopsis Sequence Match ( AT5G40680.1 )
(BLAST)

001: MSLMLQKNQA RGTRASLSQF EPRKLLIAST KPTIPDLNAE PCSDSEEEET VENLTSLAPQ DAHNGLPKLM FDLEVEIFSR LSCFQYWKLN LLNKQFSQLL
101: QSREIFKVRR ERGLVQPYVL MFSSGETCWV MFDKGFKNFR QLPEIPSDFC FFYGDKETIT AGTHLIVIGR EEKRIVVWRY ELEVNKWIND TEMITPRVMY
201: ASASRGTDAF FAGGIKTSEN GGPDVVNVAE RYNSDTKTWK AMKAMHKRRK FSSGCFLRGK FYALGGRDEN DVYLTCGESY DELTDSWKLI PDMLKGMTFM
301: NPQSPPLIAV VKDNLYLLET WLNELWVYDI NANVWKNLGV VPVKANAALG WGVAFKSVGD RILVIGASVT KSWDNKMSVY TCCPFPKVEK ITWEETSCDC
401: VQLGHFIRNC CVMLA

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.