Factsheet for Bra037989.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24045	Canola	mitochondrion	97.01	97.01
Bra011908.1-P	Field mustard	mitochondrion	88.51	88.51
Bra030872.1-P	Field mustard	cytosol	88.28	88.28
AT1G55270.1	Thale cress	mitochondrion	87.36	87.56
VIT_06s0004g00860.t01	Wine grape	cytosol	73.56	73.23
Solyc01g005970.2.1	Tomato	cytosol	72.87	72.54
PGSC0003DMT400081852	Potato	cytosol	72.18	71.85
PGSC0003DMT400034149	Potato	cytosol	70.57	70.25
Solyc01g022740.2.1	Tomato	cytosol	69.89	69.57
KRH58897	Soybean	cytosol	69.89	69.57
KRH42810	Soybean	cytosol	69.89	69.57
GSMUA_Achr7P27010_001	Banana	cytosol	66.21	69.23
GSMUA_Achr3P29560_001	Banana	cytosol	65.06	68.86
Zm00001d032991_P001	Maize	cytosol	66.67	66.36
Os10t0409900-01	Rice	plastid	67.36	66.29
EER91632	Sorghum	plastid	65.98	65.68
Os03t0167800-02	Rice	cytosol	65.52	65.07
TraesCS1B01G154600.1	Wheat	plastid	65.29	64.84
TraesCS4D01G282200.1	Wheat	cytosol	60.23	62.83
TraesCS4A01G020200.1	Wheat	cytosol	62.07	62.79
TraesCS3D01G540000.1	Wheat	cytosol	61.61	62.76
TraesCS3B01G611700.1	Wheat	cytosol	61.61	62.76
TraesCS4B01G283400.1	Wheat	cytosol	61.15	61.86
TraesCS3A01G534600.1	Wheat	cytosol	60.92	61.48
HORVU4Hr1G074720.7	Barley	plasma membrane	61.84	61.28
TraesCS4B01G283500.1	Wheat	cytosol	60.23	60.79
TraesCS1D01G136700.1	Wheat	nucleus	64.83	60.39
EER95442	Sorghum	mitochondrion	60.23	59.82
KRH11716	Soybean	cytosol, golgi, plastid	51.03	59.68
HORVU1Hr1G035200.1	Barley	plasma membrane	64.83	59.37
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	59.77	59.23
HORVU3Hr1G116690.2	Barley	mitochondrion	62.07	55.44
KRH36711	Soybean	cytosol	49.43	53.35
GSMUA_Achr4P03630_001	Banana	plasma membrane	59.08	30.27
Bra032358.1-P	Field mustard	mitochondrion, plastid	24.14	26.38
Bra033998.1-P	Field mustard	cytosol	21.84	26.24
Bra004227.1-P	Field mustard	cytosol	21.61	25.2
Bra037535.1-P	Field mustard	cytosol	19.54	24.5
Bra010942.1-P	Field mustard	plastid	19.31	24.35
Bra001739.1-P	Field mustard	cytosol	18.62	23.41
Bra026073.1-P	Field mustard	cytosol	11.03	23.19
Bra005497.1-P	Field mustard	cytosol	7.59	22.92
Bra012304.1-P	Field mustard	cytosol	24.37	22.7
Bra007843.1-P	Field mustard	cytosol	19.31	22.58
Bra031360.1-P	Field mustard	plastid	12.41	22.13
Bra003447.1-P	Field mustard	cytosol	17.93	21.73
Bra002471.1-P	Field mustard	cytosol	18.16	21.07
Bra030046.1-P	Field mustard	cytosol, plastid	17.01	20.96
Bra008155.1-P	Field mustard	cytosol	13.33	19.53
Bra032983.1-P	Field mustard	cytosol	17.7	18.73
Bra016297.1-P	Field mustard	cytosol	18.16	18.54
Bra026838.1-P	Field mustard	nucleus	17.01	18.18
Bra025251.1-P	Field mustard	cytosol	17.93	18.01
Bra017407.1-P	Field mustard	nucleus, plastid	18.16	18.0
Bra024801.1-P	Field mustard	nucleus	18.62	17.88
Bra010784.1-P	Field mustard	cytosol	16.09	17.63
Bra026575.1-P	Field mustard	nucleus	17.93	17.57
Bra032052.1-P	Field mustard	cytosol	6.9	17.05
Bra030045.1-P	Field mustard	cytosol	18.39	16.99
Bra003796.1-P	Field mustard	cytosol	16.55	16.86
Bra015905.1-P	Field mustard	cytosol	15.63	16.5
Bra034944.1-P	Field mustard	cytosol	15.4	16.38

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.3	EnsemblPlantsGene:Bra037989	EnsemblPlants:Bra037989.1	EnsemblPlants:Bra037989.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4FA75	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24412
PANTHER:PTHR24412:SF234	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000253E6F3	SEG:seg

Description

AT1G55270 (E=2e-208) | kelch repeat-containing F-box family protein

Coordinates

chrA06:+:266118..267573

Molecular Weight (calculated)

48974.8 Da

IEP (calculated)

9.733

GRAVY (calculated)

-0.382

Length

435 amino acids

Sequence
(BLAST)

001: MDLSSQRQSS NGSRGFRLQA PLVDSVSCYS RVDSSLKTVV EARKFVPGSK LCIQPNINPN AHRPSKNSNR DRTRIQPPLL PGLPDDLAVA CLIRVPRADH
101: RKLRLVCKSW HRLASGNFFY SERKLLGRSE EWVHVFKKDR DGKISWNAFD PVTHLPQPLP PLPREYSEAV GFGCAVLSGC RLYLFGGKDP LRGSMRRVVF
201: YNARTNKWHR APDMLRKRHF FGCCVINNCL YVAGGECEGI QRRLRSAEVY DPNKNRWSFV ADMGASMLPL LGVVYDNKWF LKGLGSHQQV MCEAYDPEAN
301: SWSSVSDGMA TGWRDPCACP DGRLYGLDCR DGGKLRVFDE STDSWNKFMD SKVHLGNSWA FEAAALVTLN NKLCIVRNNM SMSLVDVTNP DKNSPRLWEN
401: IAVKGQSKSI ISNIWSSIAG RAVKIHIVHC QVLQA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.