Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G020200.1 | Wheat | cytosol | 97.91 | 97.91 |
| TraesCS4D01G282200.1 | Wheat | cytosol | 94.88 | 97.84 |
| TraesCS4B01G283500.1 | Wheat | cytosol | 96.28 | 96.06 |
| HORVU4Hr1G074720.7 | Barley | plasma membrane | 93.95 | 92.03 |
| TraesCS3B01G611700.1 | Wheat | cytosol | 87.67 | 88.29 |
| Os03t0167800-02 | Rice | cytosol | 81.4 | 79.91 |
| EER95442 | Sorghum | mitochondrion | 79.3 | 77.85 |
| TraesCS1B01G154600.1 | Wheat | plastid | 78.6 | 77.17 |
| Zm00001d027827_P001 | Maize | cytosol, mitochondrion, nucleus | 78.14 | 76.54 |
| GSMUA_Achr7P27010_001 | Banana | cytosol | 67.67 | 69.95 |
| GSMUA_Achr3P29560_001 | Banana | cytosol | 66.05 | 69.1 |
| PGSC0003DMT400081852 | Potato | cytosol | 68.14 | 67.05 |
| Solyc01g005970.2.1 | Tomato | cytosol | 67.91 | 66.82 |
| PGSC0003DMT400034149 | Potato | cytosol | 67.67 | 66.59 |
| VIT_06s0004g00860.t01 | Wine grape | cytosol | 67.67 | 66.59 |
| Solyc01g022740.2.1 | Tomato | cytosol | 67.44 | 66.36 |
| AT1G55270.1 | Thale cress | mitochondrion | 66.74 | 66.13 |
| CDY08233 | Canola | mitochondrion | 66.51 | 65.75 |
| KRH42810 | Soybean | cytosol | 66.51 | 65.45 |
| KRH58897 | Soybean | cytosol | 66.51 | 65.45 |
| Bra011908.1-P | Field mustard | mitochondrion | 66.05 | 65.29 |
| CDY26117 | Canola | cytosol | 66.05 | 65.29 |
| CDY02451 | Canola | cytosol | 65.35 | 64.6 |
| CDY10574 | Canola | cytosol | 65.35 | 64.6 |
| Bra030872.1-P | Field mustard | cytosol | 65.12 | 64.37 |
| CDY33062 | Canola | mitochondrion, plastid | 62.79 | 62.07 |
| CDY24045 | Canola | mitochondrion | 62.56 | 61.84 |
| Bra037989.1-P | Field mustard | cytosol, plastid | 61.86 | 61.15 |
| KRH11716 | Soybean | cytosol, golgi, plastid | 48.14 | 55.65 |
| KRH36711 | Soybean | cytosol | 46.98 | 50.12 |
| TraesCS6B01G209700.1 | Wheat | cytosol | 47.21 | 47.99 |
| GSMUA_Achr4P03630_001 | Banana | plasma membrane | 60.93 | 30.86 |
| TraesCS6B01G052900.2 | Wheat | cytosol | 21.86 | 24.61 |
| TraesCS3B01G481500.1 | Wheat | cytosol, plastid | 21.86 | 24.48 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 18.6 | 24.1 |
| TraesCS2B01G298300.1 | Wheat | mitochondrion | 21.16 | 23.76 |
| TraesCS6B01G243200.1 | Wheat | cytosol | 18.6 | 22.66 |
| TraesCS6B01G227500.1 | Wheat | cytosol, peroxisome, plastid | 23.95 | 22.39 |
| TraesCS2B01G484200.1 | Wheat | cytosol | 21.63 | 20.71 |
| TraesCS6B01G334300.1 | Wheat | cytosol, nucleus, plastid | 19.07 | 19.29 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G283400.1 | EnsemblPlantsGene:TraesCS4B01G283400 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24412 | PANTHER:PTHR24412:SF234 | PFAM:PF00646 | PFAM:PF01344 | SEG:seg | SMART:SM00256 |
| SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | MapMan:9.2.1.1.3 | : | : |
Description
No Description!
Coordinates
chr4B:+:566979247..566980539
Molecular Weight (calculated)
49376.1 Da
IEP (calculated)
9.954
GRAVY (calculated)
-0.268
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKSILYDWS MCLQVESVSC YCRVDGGLKT VVNARKFVPG ARLCMQPDVK PNKRKSRTSR KERCRTQAPL LPGLPDDLAI SCLMRVPRVE HPNLRLVCKR
101: WSRLLSGNYY YTLRKKFGMA EEWVYVFKRD RDQKISWHAF DPVHQLWKSL PPVPPEYSEA VGFGCAVLSG CYLYLFGGKG SVRGSMRRVV FYNTRTNKWH
201: RAPDMLRKRH FFGSCVITNC LYVAGGECEG IQRTLRSAEV YNPNRNRWSC ITEMSIGMVP FIGVVYDGKW FLKGFDSHRQ IVSEVYLPTS NMWSTTGNEL
301: VAGLRNPSIS FNGRLYSVDC RDACKLRVYD GDKGLWTRFM DSRRHLGSSR SFEAVALVSL DGKICVIRNN MGITLVDVCD PTTVIEIDSA RMWETFARKG
401: QHRSFMANLW STIVGRHLKT HIIHCQVLQV
101: WSRLLSGNYY YTLRKKFGMA EEWVYVFKRD RDQKISWHAF DPVHQLWKSL PPVPPEYSEA VGFGCAVLSG CYLYLFGGKG SVRGSMRRVV FYNTRTNKWH
201: RAPDMLRKRH FFGSCVITNC LYVAGGECEG IQRTLRSAEV YNPNRNRWSC ITEMSIGMVP FIGVVYDGKW FLKGFDSHRQ IVSEVYLPTS NMWSTTGNEL
301: VAGLRNPSIS FNGRLYSVDC RDACKLRVYD GDKGLWTRFM DSRRHLGSSR SFEAVALVSL DGKICVIRNN MGITLVDVCD PTTVIEIDSA RMWETFARKG
401: QHRSFMANLW STIVGRHLKT HIIHCQVLQV
001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA
Arabidopsis Description
F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.