Factsheet for Bra030872.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02451	Canola	cytosol	99.77	99.77
CDY10574	Canola	cytosol	98.85	98.85
Bra011908.1-P	Field mustard	mitochondrion	97.47	97.47
AT1G55270.1	Thale cress	mitochondrion	95.63	95.85
Bra037989.1-P	Field mustard	cytosol, plastid	88.28	88.28
VIT_06s0004g00860.t01	Wine grape	cytosol	79.54	79.18
Solyc01g005970.2.1	Tomato	cytosol	78.85	78.49
PGSC0003DMT400081852	Potato	cytosol	78.16	77.8
PGSC0003DMT400034149	Potato	cytosol	76.32	75.97
Solyc01g022740.2.1	Tomato	cytosol	75.86	75.51
KRH42810	Soybean	cytosol	75.4	75.06
KRH58897	Soybean	cytosol	75.17	74.83
GSMUA_Achr3P29560_001	Banana	cytosol	67.59	71.53
GSMUA_Achr7P27010_001	Banana	cytosol	68.28	71.39
Zm00001d032991_P001	Maize	cytosol	69.89	69.57
EER91632	Sorghum	plastid	68.97	68.65
Os10t0409900-01	Rice	plastid	69.66	68.55
Os03t0167800-02	Rice	cytosol	68.97	68.49
TraesCS1B01G154600.1	Wheat	plastid	68.28	67.81
TraesCS4D01G282200.1	Wheat	cytosol	63.45	66.19
TraesCS4A01G020200.1	Wheat	cytosol	65.29	66.05
TraesCS3D01G540000.1	Wheat	cytosol	64.6	65.81
TraesCS3B01G611700.1	Wheat	cytosol	64.37	65.57
TraesCS4B01G283400.1	Wheat	cytosol	64.37	65.12
TraesCS3A01G534600.1	Wheat	cytosol	63.68	64.27
HORVU4Hr1G074720.7	Barley	plasma membrane	64.83	64.24
TraesCS4B01G283500.1	Wheat	cytosol	63.45	64.04
EER95442	Sorghum	mitochondrion	64.37	63.93
TraesCS1D01G136700.1	Wheat	nucleus	67.82	63.17
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	63.68	63.1
KRH11716	Soybean	cytosol, golgi, plastid	53.79	62.9
HORVU1Hr1G035200.1	Barley	plasma membrane	67.59	61.89
HORVU3Hr1G116690.2	Barley	mitochondrion	64.14	57.29
KRH36711	Soybean	cytosol	52.18	56.33
GSMUA_Achr4P03630_001	Banana	plasma membrane	60.92	31.21
Bra033998.1-P	Field mustard	cytosol	22.3	26.8
Bra032358.1-P	Field mustard	mitochondrion, plastid	23.68	25.88
Bra004227.1-P	Field mustard	cytosol	21.61	25.2
Bra010942.1-P	Field mustard	plastid	19.54	24.64
Bra037535.1-P	Field mustard	cytosol	18.39	23.05
Bra031360.1-P	Field mustard	plastid	12.87	22.95
Bra003447.1-P	Field mustard	cytosol	18.62	22.56
Bra012304.1-P	Field mustard	cytosol	23.91	22.27
Bra026073.1-P	Field mustard	cytosol	10.57	22.22
Bra001739.1-P	Field mustard	cytosol	17.47	21.97
Bra007843.1-P	Field mustard	cytosol	18.62	21.77
Bra005497.1-P	Field mustard	cytosol	7.13	21.53
Bra002471.1-P	Field mustard	cytosol	17.93	20.8
Bra030046.1-P	Field mustard	cytosol, plastid	16.55	20.4
Bra032983.1-P	Field mustard	cytosol	18.62	19.71
Bra008155.1-P	Field mustard	cytosol	12.87	18.86
Bra026838.1-P	Field mustard	nucleus	17.47	18.67
Bra025251.1-P	Field mustard	cytosol	18.39	18.48
Bra016297.1-P	Field mustard	cytosol	17.93	18.31
Bra017407.1-P	Field mustard	nucleus, plastid	18.39	18.22
Bra010784.1-P	Field mustard	cytosol	16.55	18.14
Bra024801.1-P	Field mustard	nucleus	18.85	18.1
Bra026575.1-P	Field mustard	nucleus	18.39	18.02
Bra030045.1-P	Field mustard	cytosol	18.85	17.41
Bra032052.1-P	Field mustard	cytosol	6.9	17.05
Bra003796.1-P	Field mustard	cytosol	16.55	16.86
Bra015905.1-P	Field mustard	cytosol	15.63	16.5
Bra034944.1-P	Field mustard	cytosol	15.4	16.38

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:9.2.1.1.3	EnsemblPlantsGene:Bra030872	EnsemblPlants:Bra030872.1	EnsemblPlants:Bra030872.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4EQ01	PFAM:PF00646	PFAM:PF01344
PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI000254723D	SEG:seg	:	:	:	:

Description

AT1G55270 (E=2e-244) | kelch repeat-containing F-box family protein

Coordinates

chrA08:+:406497..407999

Molecular Weight (calculated)

49271.4 Da

IEP (calculated)

10.035

GRAVY (calculated)

-0.426

Length

435 amino acids

Sequence
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRSKNSKR ERTRIQPPLL PGLPDDLAVA CLIRVPRSDH
101: RKLRLVCKRW YRLASGNFFY SQRKLLRMSE EWVYVFKRDR DGKISWNTFD PVSQHPQPLP PVPREYSEAV GFGCGVLSGC HLYLFGGKDP LRGSMRRVIF
201: YNARTNKWHR APDMLRKRHF FGCCVINNCL YVAGGECEGI QRTLRSAEVY DPNKNRWSFV ADMSTAMVPL IGVVYDKKWF LKGLGSHQQV MSEAYDPESN
301: SWSPVSDGMV TGWRNPCTSL NGRLYGLDCR DGCKLRVFDE TTDSWNKFMD SKVHLGNSKA LEAAALVPLN NKLCIIRNNM SMSLVDVSNP DKNNPRVWEN
401: IAVKGQSKGI LSNIWSSIAG RAVKSHIVHC QVLQA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.