Factsheet for HORVU1Hr1G035200.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G154600.1	Wheat	plastid	89.26	96.8
TraesCS1D01G136700.1	Wheat	nucleus	91.37	92.93
Os10t0409900-01	Rice	plastid	83.79	90.05
EER91632	Sorghum	plastid	82.53	89.7
Zm00001d032991_P001	Maize	cytosol	81.05	88.1
HORVU4Hr1G074720.7	Barley	plasma membrane	71.58	77.45
GSMUA_Achr7P27010_001	Banana	cytosol	64.42	73.56
GSMUA_Achr3P29560_001	Banana	cytosol	62.32	72.02
Solyc01g005970.2.1	Tomato	cytosol	65.05	70.71
VIT_06s0004g00860.t01	Wine grape	cytosol	64.84	70.48
PGSC0003DMT400081852	Potato	cytosol	64.84	70.48
PGSC0003DMT400034149	Potato	cytosol	63.79	69.34
KRH58897	Soybean	cytosol	63.58	69.11
KRH42810	Soybean	cytosol	63.37	68.88
HORVU3Hr1G116690.2	Barley	mitochondrion	70.32	68.58
Solyc01g022740.2.1	Tomato	cytosol	62.95	68.42
Bra011908.1-P	Field mustard	mitochondrion	62.53	68.28
CDY26117	Canola	cytosol	62.53	68.28
AT1G55270.1	Thale cress	mitochondrion	62.32	68.2
CDY08233	Canola	mitochondrion	62.32	68.05
CDY02451	Canola	cytosol	62.11	67.82
CDY10574	Canola	cytosol	62.11	67.82
Bra030872.1-P	Field mustard	cytosol	61.89	67.59
CDY24045	Canola	mitochondrion	59.79	65.29
CDY33062	Canola	mitochondrion, plastid	59.79	65.29
Bra037989.1-P	Field mustard	cytosol, plastid	59.37	64.83
KRH11716	Soybean	cytosol, golgi, plastid	46.11	58.87
KRH36711	Soybean	cytosol	44.84	52.85
HORVU6Hr1G037850.2	Barley	plastid	45.26	50.47
GSMUA_Achr4P03630_001	Banana	plasma membrane	56.42	31.57
HORVU3Hr1G096780.1	Barley	cytosol, plastid	20.42	25.19
HORVU6Hr1G007030.1	Barley	cytosol	18.32	25.14
HORVU2Hr1G068790.2	Barley	cytosol	20.0	24.74
HORVU2Hr1G057140.1	Barley	cytosol	9.47	24.19
HORVU2Hr1G057150.1	Barley	cytosol	9.47	24.19
HORVU7Hr1G002140.2	Barley	mitochondrion	23.79	23.69
HORVU6Hr1G052010.1	Barley	cytosol	21.47	22.17
HORVU4Hr1G075310.1	Barley	cytosol	20.42	22.1
HORVU2Hr1G103880.2	Barley	cytosol	19.37	20.63
HORVU7Hr1G000010.5	Barley	cytosol	18.74	20.32
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	17.89	20.0
HORVU7Hr1G000070.1	Barley	cytosol	18.53	16.76
HORVU6Hr1G007080.1	Barley	cytosol	2.95	16.09

Protein Annotations

EnsemblPlants:HORVU1Hr1G035200.1	EnsemblPlantsGene:HORVU1Hr1G035200	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	PFAM:PF00646	PFAM:PF01344	SEG:seg	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000B47E862	UniProt:A0A287F439	MapMan:9.2.1.1.3	:

Description

No Description!

Coordinates

chrchr1H:-:230693799..230719744

Molecular Weight (calculated)

53548.6 Da

IEP (calculated)

9.464

GRAVY (calculated)

-0.329

Length

475 amino acids

Sequence
(BLAST)

001: QKQLTGSWSM CSPLPATASL SSTPDTEPKA AWIRPPDMDS ASRAAPPPVG AGVRVRAPLV ESVSCYCRLD TGLKTVVDAR KFASGAKMCM QPDVKQTKRK
101: SRGSRKERCR AQAPLLPGLP DDLAIACLIR VPRVEHPNLR TVCKRWNRLL SGNYYYSLRK KLSMAEEWVY VFKRDREGKI SWHAFDPLNQ LWKSLPPVPP
201: EYSEALGFGC AVLSGCYLYL FGGKDPLRGS MRRVVFYNAR TNKWHRAPDM LRKRHFFGSC VINNCLYVAG GECEGIQRTL QSAEVYDPNR NRWICIPEMN
301: NGMVPFIGVV YDNKWFLKGL DSHRQVTCEV YRPSSNLWSI IDDEMVTGWR NPSISFNGRL YSSDCRDGCK LSVYDANTGT WARFIDSKHH LGNSRAFEAT
401: GLVSLNGKLC IIHNNMSITL VDILDPTMGI ETDSACMWET VARKGQHKSF VANLWSTIAG RNLKSHIIHC QVLQI

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.