Factsheet for TraesCS1D01G136700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G154600.1	Wheat	plastid	92.72	98.86
HORVU1Hr1G035200.1	Barley	plasma membrane	92.93	91.37
Os10t0409900-01	Rice	plastid	85.87	90.72
EER91632	Sorghum	plastid	84.58	90.39
Zm00001d032991_P001	Maize	cytosol	83.08	88.79
TraesCS4D01G282200.1	Wheat	cytosol	72.81	81.53
TraesCS3D01G540000.1	Wheat	cytosol	70.24	76.81
GSMUA_Achr7P27010_001	Banana	cytosol	65.74	73.8
GSMUA_Achr3P29560_001	Banana	cytosol	63.81	72.51
Solyc01g005970.2.1	Tomato	cytosol	66.6	71.17
PGSC0003DMT400081852	Potato	cytosol	66.38	70.94
VIT_06s0004g00860.t01	Wine grape	cytosol	66.38	70.94
PGSC0003DMT400034149	Potato	cytosol	65.31	69.79
KRH58897	Soybean	cytosol	64.88	69.34
KRH42810	Soybean	cytosol	64.45	68.88
Solyc01g022740.2.1	Tomato	cytosol	64.45	68.88
CDY08233	Canola	mitochondrion	64.03	68.74
Bra011908.1-P	Field mustard	mitochondrion	63.81	68.51
CDY26117	Canola	cytosol	63.81	68.51
AT1G55270.1	Thale cress	mitochondrion	63.6	68.43
CDY02451	Canola	cytosol	63.38	68.05
CDY10574	Canola	cytosol	63.38	68.05
Bra030872.1-P	Field mustard	cytosol	63.17	67.82
CDY33062	Canola	mitochondrion, plastid	60.81	65.29
CDY24045	Canola	mitochondrion	60.81	65.29
Bra037989.1-P	Field mustard	cytosol, plastid	60.39	64.83
KRH11716	Soybean	cytosol, golgi, plastid	46.9	58.87
KRH36711	Soybean	cytosol	45.4	52.61
TraesCS6D01G167900.1	Wheat	plastid	47.11	52.01
GSMUA_Achr4P03630_001	Banana	plasma membrane	57.39	31.57
TraesCS4D01G286700.1	Wheat	cytosol	18.63	26.36
TraesCS7D01G016400.1	Wheat	cytosol, plastid	24.84	25.44
TraesCS3D01G439000.1	Wheat	cytosol	20.77	25.26
TraesCS2D01G499800.1	Wheat	mitochondrion	21.84	25.19
TraesCS6D01G043400.1	Wheat	cytosol	20.13	24.61
TraesCS2D01G279700.1	Wheat	mitochondrion	20.13	24.54
TraesCS6D01G195800.1	Wheat	cytosol	18.2	24.08
TraesCS7D01G483900.1	Wheat	cytosol	18.42	22.45
TraesCS7D01G005100.1	Wheat	cytosol	10.06	21.86
TraesCS7D01G007100.1	Wheat	cytosol	16.92	21.24
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	18.84	20.71
TraesCS2D01G463000.1	Wheat	cytosol	19.49	20.36

Protein Annotations

EnsemblPlants:TraesCS1D01G136700.1	EnsemblPlantsGene:TraesCS1D01G136700	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	PFAM:PF00646	PFAM:PF01344	SEG:seg	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	MapMan:9.2.1.1.3	:	:	:

Description

No Description!

Coordinates

chr1D:+:182673158..182678013

Molecular Weight (calculated)

52864.8 Da

IEP (calculated)

9.627

GRAVY (calculated)

-0.362

Length

467 amino acids

Sequence
(BLAST)

001: MSPTPGDREP LVHSRHRAES RVDSPPDPAM DSASRVAPPP VSAGVRVRAP LVESVSCYCR LDTGLKTVVD ARKFASGAKM CMQPDVKQTK RKSRGSRKER
101: CRAQAPLLPG LPDDLAIACL IRVPRVEHPN LRTVCKRWNR LLSGNYYYSL RKKLSMAEEW VYVFKRDREG KISWHAFDPL NQLWKSLPPV PPEYSEALGF
201: GCAVLSGCYL YLFGGKDPLR GSMRRVVFYN ARTNKWHRAP DMLRKRHFFG SCVINNCLYV AGGECEGIQR TLQSAEVYDP NRNRWVCIPE MNNGMVPFIG
301: VVYDDKWFLK GLDSHRQVTC EVYLPSSNLW STIDDEMVTG WRNPSISFNG RLYSSDCRDG CKLRVYDANT GTWARFIDSR HHLGSSRAFE AAGLVSLNGK
401: LCIIRNNMSI TLVDILDPTM SIETDSACMW KTVARKGQHK SFVANLWSTI AGRNLKSHII HCQVLQI

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.