Factsheet for TraesCS7D01G483900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G308700.1
TraesCS1A01G308800.1
TraesCS1B01G319300.1
TraesCS1D01G308000.1
TraesCS2B01G113800.2
TraesCS3A01G184500.1
TraesCS3A01G191900.1
TraesCS3A01G335000.1
TraesCS3B01G219900.1
TraesCS3B01G365900.1
TraesCS3D01G188600.1
TraesCS3D01G194500.2
TraesCS3D01G328300.1
TraesCS4B01G131100.1
TraesCS4D01G126100.1
TraesCS5A01G057100.1
TraesCS5A01G057200.1
TraesCS5A01G139700.1
TraesCS5B01G059900.1
TraesCS5B01G137100.1
TraesCS5D01G068000.1
TraesCS5D01G068100.1
TraesCS5D01G153400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24540.1	TraesCS1A01G308700.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS1A01G308800.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS1B01G319300.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS1D01G308000.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS2B01G113800.2	AT2G41090.1	17360592
AT2G24540.1	TraesCS3A01G184500.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS3A01G191900.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS3A01G335000.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS3B01G219900.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS3B01G365900.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS3D01G188600.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS3D01G194500.2	AT2G41090.1	17360592
AT2G24540.1	TraesCS3D01G328300.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS4B01G131100.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS4D01G126100.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS5A01G057100.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS5A01G057200.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS5A01G139700.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS5B01G059900.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS5B01G137100.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS5D01G068000.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS5D01G068100.1	AT2G41090.1	17360592
AT2G24540.1	TraesCS5D01G153400.1	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G496600.1	Wheat	cytosol	97.39	96.88
TraesCS5A01G544300.1	Wheat	extracellular, plasma membrane	71.02	95.1
EER90147	Sorghum	cytosol	84.6	82.44
Zm00001d046922_P001	Maize	cytosol	82.51	82.08
Os06t0655500-01	Rice	cytosol	82.25	82.03
Zm00001d046921_P001	Maize	cytosol	82.77	80.46
GSMUA_AchrUn_...	Banana	cytosol	48.56	52.1
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	40.73	42.16
KRH61941	Soybean	plastid	35.25	38.46
KRH52601	Soybean	extracellular, golgi	39.69	38.1
CDX76807	Canola	cytosol	36.55	37.94
Bra007843.1-P	Field mustard	cytosol	36.81	37.9
CDY34765	Canola	cytosol	36.81	37.9
AT2G24540.1	Thale cress	cytosol	34.73	35.75
TraesCS2D01G499800.1	Wheat	mitochondrion	35.25	33.33
TraesCS6D01G167900.1	Wheat	plastid	27.42	24.82
TraesCS3D01G439000.1	Wheat	cytosol	21.15	21.09
TraesCS6D01G195800.1	Wheat	cytosol	19.32	20.96
TraesCS2D01G279700.1	Wheat	mitochondrion	20.89	20.89
TraesCS7D01G016400.1	Wheat	cytosol, plastid	24.8	20.83
TraesCS7D01G005100.1	Wheat	cytosol	10.97	19.53
TraesCS3D01G540000.1	Wheat	cytosol	21.41	19.2
TraesCS4D01G282200.1	Wheat	cytosol	20.89	19.18
TraesCS4D01G286700.1	Wheat	cytosol	16.19	18.79
TraesCS1D01G136700.1	Wheat	nucleus	22.45	18.42
TraesCS6D01G043400.1	Wheat	cytosol	18.28	18.32
TraesCS7D01G007100.1	Wheat	cytosol	16.45	16.94
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	15.67	14.12
TraesCS2D01G463000.1	Wheat	cytosol	14.62	12.53

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009585	GO:GO:0009605
GO:GO:0009628	GO:GO:0009987	GO:GO:0010017	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF31	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS7D01G483900	EnsemblPlants:TraesCS7D01G483900.1	SEG:seg	:

Description

No Description!

Coordinates

chr7D:-:593682913..593684630

Molecular Weight (calculated)

40693.1 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.067

Length

383 amino acids

Sequence
(BLAST)

001: MSFSSACKQQ VLGAGGEEAR EEEGAMELIP GLPEEVAEKC LLHLPFLYHR LFRTVSSNWN RFLTDAPGAA AKGSAPPAAT ATVSLSLPFL FAFAFDPVSR
101: RLQCQALDPF SRRWLLLPPV PCGAAAGSFA VVGLPARGEI YVIGGVEEGG DKAVSSVAVY SAATNRWGQV AGMRTARGYM AAGEVGGRVV VAGEDGEAEV
201: FDPESARWSP AAPRGGAAVA RYDAAAAGGK LYVTEGWAWP FERAPRGAVY DAAADAWSDM ARGMREGWTG SCAVSGGRMY IVAEYGEWRL KRYDEPRDEW
301: RMVAGGGVPQ EVRRPHVVAG QLEEVGCGRR RIYVVGAGLD VAVGTVSAVQ SGAAEEERVE WEVVKGPEEF VGLAPCNAQV LYA

Best Arabidopsis Sequence Match ( AT2G24540.1 )
(BLAST)

001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV

Arabidopsis Description

AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.