Factsheet for GSMUA_AchrUn_randomP18140_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24540.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT2G24540.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	53.78	51.89
TraesCS7A01G496600.1	Wheat	cytosol	52.94	49.09
TraesCS5A01G544300.1	Wheat	extracellular, plasma membrane	38.94	48.6
TraesCS7D01G483900.1	Wheat	cytosol	52.1	48.56
Os06t0655500-01	Rice	cytosol	51.54	47.92
EER90147	Sorghum	cytosol	51.82	47.07
Zm00001d046922_P001	Maize	cytosol	50.14	46.49
Zm00001d046921_P001	Maize	cytosol	50.42	45.69
Bra007843.1-P	Field mustard	cytosol	45.66	43.82
CDX76807	Canola	cytosol	45.1	43.63
CDY34765	Canola	cytosol	45.1	43.28
AT2G24540.1	Thale cress	cytosol	44.26	42.47
KRH61941	Soybean	plastid	39.22	39.89
KRH52601	Soybean	extracellular, golgi	43.7	39.1
GSMUA_Achr6P31190_001	Banana	mitochondrion	40.34	35.04
GSMUA_Achr6P24370_001	Banana	cytosol	23.53	24.21
GSMUA_Achr6P04050_001	Banana	cytosol	25.77	20.22
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	21.57	19.74
GSMUA_Achr7P08330_001	Banana	cytosol	21.57	19.54
GSMUA_Achr10P...	Banana	cytosol	27.17	18.65
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	21.29	18.63
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	19.89	18.59
GSMUA_Achr4P20790_001	Banana	extracellular	19.33	18.3
GSMUA_Achr2P18470_001	Banana	cytosol	21.29	17.84
GSMUA_Achr7P27010_001	Banana	cytosol	20.73	17.79
GSMUA_Achr3P29560_001	Banana	cytosol	20.17	17.52
GSMUA_Achr1P21630_001	Banana	cytosol	18.21	17.24
GSMUA_Achr8P28270_001	Banana	cytosol	18.49	17.19
GSMUA_Achr4P09990_001	Banana	cytosol	20.45	17.02
GSMUA_Achr7P20970_001	Banana	cytosol	18.77	16.96
GSMUA_Achr4P00520_001	Banana	cytosol	17.93	16.45
GSMUA_Achr8P01380_001	Banana	cytosol	16.53	15.53
GSMUA_Achr2P22090_001	Banana	cytosol	16.25	15.38
GSMUA_Achr9P30470_001	Banana	cytosol	16.81	15.35
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	17.09	15.14
GSMUA_Achr8P17960_001	Banana	nucleus	16.81	14.42
GSMUA_Achr11P...	Banana	cytosol	17.09	13.86
GSMUA_Achr10P...	Banana	nucleus	16.53	13.56
GSMUA_Achr3P01570_001	Banana	golgi	17.93	13.09
GSMUA_Achr2P14920_001	Banana	mitochondrion	16.81	12.55
GSMUA_Achr4P24130_001	Banana	nucleus	16.53	11.41
GSMUA_Achr4P03630_001	Banana	plasma membrane	21.29	8.95

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009585	GO:GO:0009605
GO:GO:0009628	GO:GO:0009987	GO:GO:0010017	EnsemblPlantsGene:GSMUA_AchrUn_randomG18140_001	EnsemblPlants:GSMUA_AchrUn_randomP18140_001	EnsemblPlants:GSMUA_AchrUn_randomT18140_001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M0UA73	PFAM:PF00646
PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF31	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI000295B276	SEG:seg	:	:	:

Description

Putative F-box protein AFR [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG18140_001]

Coordinates

chrchrUn_random:-:85823418..85824748

Molecular Weight (calculated)

38246.1 Da

IEP (calculated)

4.826

GRAVY (calculated)

-0.153

Length

357 amino acids

Sequence
(BLAST)

001: MPPRSEPIET AAAEEEETRG AEPKVEEMEP LIPGLPDEVA EQCLLHLPFP YQSLARSVSS SWNRALSSPS FIRSKAKAAA ALSLPYLFAF AFDRSTLRLQ
101: WQALDCRTSR WFLYVLGGMR ADTQSPLQTL LAYRAGTNSW SAAAPMPTPR CFFAAGAIGG RIFAAGGDDG GISAVECYDP AADRWAPAAG MRRGMARYDA
201: AVVGRRMYVT EGWTWPFDSS PRGGVYDADR DAWEEMRVGM REGWTGASAV VGGRLYVVSE CGDGRVKAYD EETDRWRAVA GGAVPAEVKR PYAVTGGGAA
301: EDGRIYVVGS GLDVGVGTVV EAAAGGRGAV ERVEWQVVKG PPAFADLAPC NALVLYA

Best Arabidopsis Sequence Match ( AT2G24540.1 )
(BLAST)

001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV

Arabidopsis Description

AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.