Factsheet for GSMUA_Achr2P17100_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P08330_001	Banana	cytosol	79.9	82.74
GSMUA_Achr3P29560_001	Banana	cytosol	63.97	63.5
GSMUA_Achr7P27010_001	Banana	cytosol	64.71	63.46
TraesCS6D01G167900.1	Wheat	plastid	56.37	54.37
Zm00001d015744_P001	Maize	plastid	55.64	54.31
HORVU6Hr1G037850.2	Barley	plastid	56.62	54.23
KXG29748	Sorghum	plastid	57.6	54.02
TraesCS6A01G175700.1	Wheat	plastid	55.39	53.43
Os02t0202900-00	Rice	cytosol	56.62	52.98
TraesCS6B01G209700.1	Wheat	cytosol	54.17	52.25
GSMUA_Achr4P03630_001	Banana	plasma membrane	58.82	28.27
GSMUA_Achr6P31190_001	Banana	mitochondrion	25.49	25.3
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	23.53	25.13
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	24.02	25.13
GSMUA_Achr8P28270_001	Banana	cytosol	22.79	24.22
GSMUA_Achr6P04050_001	Banana	cytosol	24.26	21.76
GSMUA_Achr2P22090_001	Banana	cytosol	20.1	21.75
GSMUA_Achr4P20790_001	Banana	extracellular	19.85	21.49
GSMUA_AchrUn_...	Banana	cytosol	18.63	21.29
GSMUA_Achr6P24370_001	Banana	cytosol	17.89	21.04
GSMUA_Achr9P30470_001	Banana	cytosol	17.89	18.67
GSMUA_Achr10P...	Banana	cytosol	23.28	18.27
GSMUA_Achr2P18470_001	Banana	cytosol	18.87	18.08
GSMUA_Achr8P01380_001	Banana	cytosol	16.18	17.37
GSMUA_Achr1P21630_001	Banana	cytosol	15.69	16.98
GSMUA_Achr4P09990_001	Banana	cytosol	17.65	16.78
GSMUA_Achr11P...	Banana	cytosol	17.65	16.36
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	15.93	16.13
GSMUA_Achr7P20970_001	Banana	cytosol	15.44	15.95
GSMUA_Achr4P00520_001	Banana	cytosol	14.71	15.42
GSMUA_Achr8P17960_001	Banana	nucleus	15.2	14.9
GSMUA_Achr10P...	Banana	nucleus	15.69	14.71
GSMUA_Achr2P14920_001	Banana	mitochondrion	16.18	13.81
GSMUA_Achr3P01570_001	Banana	golgi	16.18	13.5
GSMUA_Achr4P24130_001	Banana	nucleus	16.67	13.15

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.3	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G17100_001	EnsemblPlants:GSMUA_Achr2P17100_001	EnsemblPlants:GSMUA_Achr2T17100_001	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M0S8Q1	PFAM:PF00646	PFAM:PF01344	PFscan:PS51257
PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000295EDC3

Description

F-box/kelch-repeat protein At1g55270 [Source:GMGC_GENE;Acc:GSMUA_Achr2G17100_001]

Coordinates

chr2:+:17765269..17766795

Molecular Weight (calculated)

46216.9 Da

IEP (calculated)

10.095

GRAVY (calculated)

-0.283

Length

408 amino acids

Sequence
(BLAST)

001: MQFGNLRQNS CSVSSFSCTQ VDSRACLCRV DAGLKTVTGA KKYVPSTKLC VQPRIRTSIH PVRPNPAFDR NRIQSPLLPG LPDDLAIACL IRVPRPEHRK
101: LRLVCKRWQR LLAGNYFYSL RKSLSVAEEW IYIIRRDREG RISWDAFDPR FQLWHPLPPV PKEYSKAIGF GCAVLHGCHL YLFGGKDPCK GSMRRVIYYN
201: ARTNKWHRAP DMLRRRHFFG ACVINNCLYV AGGESEGVHR FLRSAEFYDP SKNRWSFVSE MSAAMVPFIG VVYEGKWFLK GLGPQQQLLT DVYFPETDTW
301: DGCKLRVYDA GAGSWSRHID SKLHLGSSRA MEAAALVPLN GKLCIVRNNM SITLVDVEAR DGAGSGDQRW ETIAGKGQLK TFVTNLLSNI AGRRSNRSYI
401: VHCQVLQA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.