Factsheet for GSMUA_Achr2P18470_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g042960.1.1	Tomato	cytosol, mitochondrion	21.83	52.84
CDY35074	Canola	cytosol	23.0	46.89
Bra026073.1-P	Field mustard	cytosol	22.77	46.86
Bra005497.1-P	Field mustard	cytosol	15.49	45.83
CDY17172	Canola	cytosol	15.49	45.83
AT1G16250.2	Thale cress	cytosol	40.61	45.17
CDX81755	Canola	cytosol	40.85	44.62
CDX96822	Canola	extracellular, vacuole	40.61	40.05
CDY33348	Canola	cytosol	16.43	38.89
Solyc07g042950.1.1	Tomato	cytosol	14.32	34.27
CDY35075	Canola	cytosol	14.32	33.15
GSMUA_Achr6P24370_001	Banana	cytosol	22.3	27.38
GSMUA_AchrUn_...	Banana	cytosol	17.84	21.29
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	19.25	21.03
GSMUA_Achr6P31190_001	Banana	mitochondrion	19.25	19.95
GSMUA_Achr7P08330_001	Banana	cytosol	18.31	19.8
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	17.61	19.63
GSMUA_Achr8P28270_001	Banana	cytosol	17.37	19.27
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	18.08	18.87
GSMUA_Achr6P04050_001	Banana	cytosol	19.95	18.68
GSMUA_Achr4P20790_001	Banana	extracellular	16.43	18.57
GSMUA_Achr7P27010_001	Banana	cytosol	17.14	17.55
GSMUA_Achr3P29560_001	Banana	cytosol	16.9	17.52
GSMUA_Achr4P09990_001	Banana	cytosol	17.61	17.48
GSMUA_Achr9P30470_001	Banana	cytosol	15.49	16.88
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	15.73	16.63
GSMUA_Achr10P...	Banana	cytosol	19.01	15.58
GSMUA_Achr1P21630_001	Banana	cytosol	13.62	15.38
GSMUA_Achr8P01380_001	Banana	cytosol	13.62	15.26
GSMUA_Achr7P20970_001	Banana	cytosol	14.08	15.19
GSMUA_Achr4P00520_001	Banana	cytosol	13.85	15.17
GSMUA_Achr11P...	Banana	cytosol	15.26	14.77
GSMUA_Achr2P22090_001	Banana	cytosol	12.44	14.06
GSMUA_Achr10P...	Banana	nucleus	13.15	12.87
GSMUA_Achr8P17960_001	Banana	nucleus	12.21	12.5
GSMUA_Achr2P14920_001	Banana	mitochondrion	13.62	12.13
GSMUA_Achr3P01570_001	Banana	golgi	13.62	11.86
GSMUA_Achr4P24130_001	Banana	nucleus	12.91	10.64
GSMUA_Achr4P03630_001	Banana	plasma membrane	16.43	8.24

Protein Annotations

EnsemblPlants:GSMUA_Achr2P18470_001	EnsemblPlants:GSMUA_Achr2T18470_001	EnsemblPlantsGene:GSMUA_Achr2G18470_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24414	PANTHER:PTHR24414:SF41
PFAM:PF01344	SEG:seg	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI000296C7D9	UniProt:M0S938
MapMan:35.1	:	:	:	:	:

Description

Putative F-box/kelch-repeat protein At1g16250 [Source:GMGC_GENE;Acc:GSMUA_Achr2G18470_001]

Coordinates

chr2:-:18873063..18874998

Molecular Weight (calculated)

47850.9 Da

IEP (calculated)

6.224

GRAVY (calculated)

-0.306

Length

426 amino acids

Sequence
(BLAST)

001: MRGTKKYTID YSRVDREGFL FSSTRQPERC CSCPPPPPPA LRRIEATNMD SCGDDDDGRT CEAILPGLPD DLALRCLAKI SHGYHGLLEC VSKKWKRAIR
101: SMDYAHIKAR EGWCGDWLFV LGADSPALWH AYDPDADRWH PLPRMPGFTD DDELCRFSCV SVSNKFLVIG GCHISHSEKR CWETRSVMVF DPFKKQWNAA
201: ANMQTARTDF ACAVISDKVY VAGGSNSSSS EGLATAEVYD PDADKWKDLP SMPFPLIECF SISHGGQFHV VGKRICNFQH DTYVTFNPSD QKWHVMEDLL
301: PVCKLTHDTT TIIESDIYSI LPDGTVTMVM PDQKDWHALG VYPAVVLPDH DRPLSPFGFG FIAFGRCIYV VGGMVLKYNT SNHTYAYVKL DATKFCDPRT
401: SPLEWQDAKP MPVQACRILG CASMEE

Best Arabidopsis Sequence Match ( AT1G16250.2 )
(BLAST)

001: MESIEQSIIP GLPDDLALRC IAKLSHGYHG VLECVSRGWR DLVRGADYSC YKARNGWSGS WLFVLTERSK NQWVAYDPEA DRWHPLPRTR AVQDGWHHSG
101: FACVCVSNCL LVIGGCYAPS VSSFPHQKPV VTKDVMRFDP FKKQWKMVAS MRTPRTHFAC TSVSGKVYVA GGRNLTHSRG IPSAEVYDPV ADRWEELPAM
201: PRPQMDCSGL SYRGCFHVLS DQVGFAEQNS SEVFNPRDMT WSTVEDVWPF SRAMQFAVQV MKNDRVYTIV DWGESLIKTR DTDEGEWYNV GSVPSVVLPN
301: HPRELEAFGY GFAALRNELY VIGGKVLKWE ESGAGRFDIV RLPVVRVCNP LDRPLNWRET KPMCIPAGGS IIGCVSLEES SPP

Arabidopsis Description

F-box/kelch-repeat protein At1g16250 [Source:UniProtKB/Swiss-Prot;Acc:Q0WW40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.