Factsheet for Solyc07g042950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35075	Canola	cytosol	48.88	47.28
CDY33348	Canola	cytosol	35.39	35.0
AT1G16250.2	Thale cress	cytosol	60.67	28.2
CDX81755	Canola	cytosol	59.55	27.18
CDX96822	Canola	extracellular, vacuole	59.55	24.54
GSMUA_Achr2P18470_001	Banana	cytosol	34.27	14.32
Solyc11g069320.1.1	Tomato	plastid	15.17	12.39
Solyc09g065400.1.1	Tomato	cytosol	16.29	8.41
Solyc06g008690.1.1	Tomato	cytosol	15.73	8.12
Solyc04g005870.1.1	Tomato	cytosol	2.25	7.55
Solyc01g005970.2.1	Tomato	cytosol	16.85	6.86
Solyc01g094520.2.1	Tomato	nucleus	15.17	6.77
Solyc01g104980.2.1	Tomato	cytosol, plastid	17.42	6.53
Solyc01g022740.2.1	Tomato	cytosol	15.73	6.41
Solyc04g005670.1.1	Tomato	cytosol	14.04	6.19
Solyc07g009410.2.1	Tomato	cytosol	14.04	5.61
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	12.36	5.47
Solyc03g113010.1.1	Tomato	cytosol	13.48	5.44
Solyc05g007220.2.1	Tomato	nucleus	15.17	4.19
Solyc07g042960.1.1	Tomato	cytosol, mitochondrion	1.69	1.7
CDY35074	Canola	cytosol	0.0	0.0
CDY17172	Canola	cytosol	0.0	0.0
Bra026073.1-P	Field mustard	cytosol	0.0	0.0
Bra005497.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc07g042950.1.1	EnsemblPlantsGene:Solyc07g042950.1	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF41	SUPFAM:SSF50965
UniParc:UPI000276C1EA	UniProt:K4CEF5	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr7:-:56489991..56490527

Molecular Weight (calculated)

20034.1 Da

IEP (calculated)

4.832

GRAVY (calculated)

-0.017

Length

178 amino acids

Sequence
(BLAST)

001: MDCIGLPYNG KFYVLTDLVG LLEQETSVVF DPSDETWLSV NDTWPFSRAM HLGIQVLDGG HICTVVDWGG SAIETRDVDN TEWHRRGLVP PVVLPDHPRP
101: LEVFDYGFVA LRNEIYVLGG RVLRWEESGT GKFNIVKLST VRVCNPLSLP LRWREIRPMC EPAFGSILGC ASMETRSL

Best Arabidopsis Sequence Match ( AT1G16250.2 )
(BLAST)

001: MESIEQSIIP GLPDDLALRC IAKLSHGYHG VLECVSRGWR DLVRGADYSC YKARNGWSGS WLFVLTERSK NQWVAYDPEA DRWHPLPRTR AVQDGWHHSG
101: FACVCVSNCL LVIGGCYAPS VSSFPHQKPV VTKDVMRFDP FKKQWKMVAS MRTPRTHFAC TSVSGKVYVA GGRNLTHSRG IPSAEVYDPV ADRWEELPAM
201: PRPQMDCSGL SYRGCFHVLS DQVGFAEQNS SEVFNPRDMT WSTVEDVWPF SRAMQFAVQV MKNDRVYTIV DWGESLIKTR DTDEGEWYNV GSVPSVVLPN
301: HPRELEAFGY GFAALRNELY VIGGKVLKWE ESGAGRFDIV RLPVVRVCNP LDRPLNWRET KPMCIPAGGS IIGCVSLEES SPP

Arabidopsis Description

F-box/kelch-repeat protein At1g16250 [Source:UniProtKB/Swiss-Prot;Acc:Q0WW40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.