Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013635 | Potato | cytosol | 98.55 | 98.55 |
| Solyc09g065400.1.1 | Tomato | cytosol | 79.71 | 79.71 |
| VIT_07s0151g00770.t01 | Wine grape | cytosol | 72.75 | 72.75 |
| KRH32035 | Soybean | cytosol | 71.3 | 71.51 |
| KRH67237 | Soybean | cytosol | 71.3 | 71.3 |
| KRG95556 | Soybean | cytosol | 70.72 | 70.72 |
| KRH71403 | Soybean | cytosol | 70.43 | 70.64 |
| CDX82306 | Canola | cytosol | 65.51 | 65.32 |
| CDY22982 | Canola | cytosol | 65.51 | 65.32 |
| AT3G63220.2 | Thale cress | cytosol | 66.38 | 65.06 |
| Bra001739.1-P | Field mustard | cytosol | 65.22 | 65.03 |
| CDX99248 | Canola | cytosol | 64.35 | 63.79 |
| Bra037535.1-P | Field mustard | cytosol | 63.48 | 63.11 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 62.61 | 62.25 |
| CDY58259 | Canola | cytosol | 62.61 | 62.25 |
| CDY18573 | Canola | cytosol | 62.03 | 61.49 |
| Os10t0388200-01 | Rice | cytosol | 60.58 | 60.23 |
| OQU82118 | Sorghum | cytosol | 60.58 | 60.06 |
| Zm00001d014338_P001 | Maize | cytosol | 60.29 | 59.77 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 56.23 | 58.43 |
| TraesCS6D01G195800.1 | Wheat | cytosol | 59.71 | 58.36 |
| TraesCS6B01G243200.1 | Wheat | cytosol | 59.71 | 58.36 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 48.12 | 53.9 |
| Solyc07g042960.1.1 | Tomato | cytosol, mitochondrion | 15.65 | 30.68 |
| Solyc01g094520.2.1 | Tomato | nucleus | 24.64 | 21.3 |
| Solyc01g005970.2.1 | Tomato | cytosol | 25.22 | 19.91 |
| Solyc02g021600.1.1 | Tomato | cytosol, mitochondrion, peroxisome, plastid | 23.19 | 19.9 |
| Solyc01g104980.2.1 | Tomato | cytosol, plastid | 27.25 | 19.79 |
| Solyc01g022740.2.1 | Tomato | cytosol | 23.48 | 18.54 |
| Solyc11g069320.1.1 | Tomato | plastid | 11.3 | 17.89 |
| HORVU6Hr1G007080.1 | Barley | cytosol | 4.06 | 16.09 |
| Solyc04g005670.1.1 | Tomato | cytosol | 18.84 | 16.09 |
| Solyc07g042950.1.1 | Tomato | cytosol | 8.12 | 15.73 |
| Solyc04g005870.1.1 | Tomato | cytosol | 2.32 | 15.09 |
| Solyc03g113010.1.1 | Tomato | cytosol | 19.13 | 14.97 |
| Solyc07g009410.2.1 | Tomato | cytosol | 15.36 | 11.88 |
| Solyc05g007220.2.1 | Tomato | nucleus | 20.0 | 10.71 |
Protein Annotations
| EnsemblPlants:Solyc06g008690.1.1 | EnsemblPlantsGene:Solyc06g008690.1 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF29 | PFAM:PF01344 |
| SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0002766914 | UniProt:K4C3P9 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6:+:2606567..2607604
Molecular Weight (calculated)
38417.3 Da
IEP (calculated)
7.499
GRAVY (calculated)
0.018
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MTALIEGLPD AVAIRCLARV PFYLHPKLEL VSHSWRAAIQ SAELFKARQE VNSSEEFLCV SAFEPENLWE LYDPTHDLWI TLPILPSNIS HFARFSVVST
101: AGKLFVLGGG SDAVDPLTGD QDGIFATDKV WSYDPATRAW NPRASMLVPR AMFACCVLDG KIVAAGGFTN RRKSICNAEI YDPETNVWVQ LPDLHHAHNS
201: ACSGVVFGGK VHVLHKGLST IQVLENFKQG WIAHEYSWLQ GPMTVVRGKL YVMSNWFIYK QEGESRRMIV SASDFRRRIG YAMIGLGDDI YIVGGVNGPD
301: YWNCSVKVLS DVDVLTLGSE RPAWRKVAPL TRCRGTILGC TQLRI
101: AGKLFVLGGG SDAVDPLTGD QDGIFATDKV WSYDPATRAW NPRASMLVPR AMFACCVLDG KIVAAGGFTN RRKSICNAEI YDPETNVWVQ LPDLHHAHNS
201: ACSGVVFGGK VHVLHKGLST IQVLENFKQG WIAHEYSWLQ GPMTVVRGKL YVMSNWFIYK QEGESRRMIV SASDFRRRIG YAMIGLGDDI YIVGGVNGPD
301: YWNCSVKVLS DVDVLTLGSE RPAWRKVAPL TRCRGTILGC TQLRI
001: MCYRQETMSG LLDGIPEAVA LRCLAHVPLH LHPNLELVSR SWRAAIRSHE LFRVRKELRS SEHLLCVCAF DPENIWQVYS PNCDRWLTLP LLPSRIRHLA
101: HFGAVTTAGM LFVLGGGSDA VSPVTGDHDG TFATDQVWSY DFVQRQWTPR ASMLVPRAMF ACCVLQGKIV VAGGFTTCRK SISGAEMYDP ENDVWTSIPD
201: LHQTHNSACS GLVVNGKVHV LHKGLSTVQV LESVKLGWDV KDYGWPQGPM VVVEDVLYVM SHGLVFKQEG DTWKMVASAS EFKRRIGMAM TSLSDEVLIV
301: GGVIGPDRLN WDIKPLSDVD ALTVGNDRPA WRSVAPMTRC RGTILGCTQL TI
101: HFGAVTTAGM LFVLGGGSDA VSPVTGDHDG TFATDQVWSY DFVQRQWTPR ASMLVPRAMF ACCVLQGKIV VAGGFTTCRK SISGAEMYDP ENDVWTSIPD
201: LHQTHNSACS GLVVNGKVHV LHKGLSTVQV LESVKLGWDV KDYGWPQGPM VVVEDVLYVM SHGLVFKQEG DTWKMVASAS EFKRRIGMAM TSLSDEVLIV
301: GGVIGPDRLN WDIKPLSDVD ALTVGNDRPA WRSVAPMTRC RGTILGCTQL TI
Arabidopsis Description
SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.