Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82306 | Canola | cytosol | 88.22 | 88.73 |
| CDY22982 | Canola | cytosol | 87.93 | 88.44 |
| CDY18573 | Canola | cytosol | 85.34 | 85.34 |
| CDY58259 | Canola | cytosol | 84.48 | 84.73 |
| AT3G63220.2 | Thale cress | cytosol | 83.33 | 82.39 |
| VIT_07s0151g00770.t01 | Wine grape | cytosol | 68.97 | 69.57 |
| PGSC0003DMT400049746 | Potato | cytosol | 67.82 | 68.41 |
| Solyc09g065400.1.1 | Tomato | cytosol | 67.82 | 68.41 |
| KRH32035 | Soybean | cytosol | 66.38 | 67.15 |
| KRH71403 | Soybean | cytosol | 66.09 | 66.86 |
| KRH67237 | Soybean | cytosol | 66.09 | 66.67 |
| KRG95556 | Soybean | cytosol | 64.94 | 65.51 |
| Solyc06g008690.1.1 | Tomato | cytosol | 63.79 | 64.35 |
| PGSC0003DMT400013635 | Potato | cytosol | 63.51 | 64.06 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 56.9 | 57.06 |
| OQU82118 | Sorghum | cytosol | 56.32 | 56.32 |
| Os10t0388200-01 | Rice | cytosol | 56.03 | 56.2 |
| TraesCS6B01G243200.1 | Wheat | cytosol | 56.9 | 56.09 |
| TraesCS6D01G195800.1 | Wheat | cytosol | 56.9 | 56.09 |
| Zm00001d014338_P001 | Maize | cytosol | 56.03 | 56.03 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 53.45 | 56.02 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 45.11 | 50.97 |
| CDX81755 | Canola | cytosol | 29.02 | 25.9 |
| CDY33348 | Canola | cytosol | 12.93 | 25.0 |
| CDX76807 | Canola | cytosol | 25.86 | 24.39 |
| CDY34765 | Canola | cytosol | 25.57 | 23.92 |
| CDY35074 | Canola | cytosol | 14.37 | 23.92 |
| CDX96822 | Canola | extracellular, vacuole | 29.31 | 23.61 |
| CDY12647 | Canola | cytosol | 24.14 | 23.2 |
| CDY01812 | Canola | cytosol | 24.14 | 22.52 |
| CDY01301 | Canola | cytosol | 10.06 | 22.29 |
| CDX96091 | Canola | cytosol | 23.85 | 22.25 |
| CDY31534 | Canola | cytosol | 23.28 | 21.6 |
| CDY17172 | Canola | cytosol | 8.91 | 21.53 |
| CDY70379 | Canola | cytosol | 9.77 | 21.52 |
| CDY58793 | Canola | cytosol | 22.13 | 21.45 |
| CDY51562 | Canola | cytosol | 22.13 | 21.45 |
| CDX80156 | Canola | cytosol | 23.28 | 21.37 |
| CDY64883 | Canola | golgi, plastid | 24.14 | 20.44 |
| CDX99882 | Canola | mitochondrion, plastid | 22.7 | 19.85 |
| CDY26295 | Canola | mitochondrion, plastid | 22.41 | 19.6 |
| CDX90085 | Canola | plastid | 19.25 | 19.42 |
| CDY24045 | Canola | mitochondrion | 24.14 | 19.31 |
| CDY11811 | Canola | plastid | 18.97 | 19.13 |
| CDY70128 | Canola | cytosol | 18.39 | 18.99 |
| CDY15708 | Canola | cytosol | 18.68 | 18.95 |
| CDY03923 | Canola | cytosol | 18.39 | 18.93 |
| CDY33062 | Canola | mitochondrion, plastid | 23.28 | 18.62 |
| CDY02451 | Canola | cytosol | 23.28 | 18.62 |
| CDY10574 | Canola | cytosol | 23.28 | 18.62 |
| CDY66857 | Canola | cytosol | 18.97 | 18.54 |
| CDX96551 | Canola | cytosol | 21.55 | 18.47 |
| CDY64382 | Canola | plastid | 18.1 | 18.42 |
| CDY08233 | Canola | mitochondrion | 22.99 | 18.39 |
| CDY26117 | Canola | cytosol | 22.99 | 18.39 |
| CDY36145 | Canola | cytosol | 18.39 | 18.29 |
| CDX68177 | Canola | cytosol | 21.84 | 18.23 |
| CDX73096 | Canola | cytosol | 20.98 | 18.2 |
| CDY52247 | Canola | cytosol | 16.67 | 18.12 |
| CDY01300 | Canola | cytosol | 11.49 | 17.86 |
| CDY54825 | Canola | cytosol | 9.77 | 17.62 |
| CDX85842 | Canola | cytosol | 21.55 | 17.56 |
| CDY04697 | Canola | cytosol | 11.21 | 17.49 |
| CDY35075 | Canola | cytosol | 9.2 | 17.39 |
| CDY00415 | Canola | mitochondrion | 10.63 | 17.29 |
| CDY30645 | Canola | nucleus | 10.92 | 17.04 |
| CDY33754 | Canola | nucleus | 12.07 | 16.8 |
| CDY16205 | Canola | nucleus | 20.4 | 16.78 |
| CDX90239 | Canola | cytosol | 18.97 | 16.62 |
| CDX81631 | Canola | nucleus | 19.25 | 16.38 |
| CDY60836 | Canola | cytosol | 17.82 | 16.32 |
| CDY49979 | Canola | cytosol | 18.97 | 16.18 |
| CDY62015 | Canola | nucleus | 19.25 | 16.14 |
| HORVU6Hr1G007080.1 | Barley | cytosol | 4.02 | 16.09 |
| CDY46430 | Canola | cytosol | 19.54 | 15.96 |
| CDY52764 | Canola | cytosol | 19.25 | 15.76 |
| CDY49094 | Canola | nucleus | 18.97 | 15.57 |
| CDY17425 | Canola | cytosol | 17.82 | 15.46 |
| CDY65956 | Canola | cytosol | 8.33 | 15.43 |
| CDY34175 | Canola | cytosol | 18.1 | 15.33 |
| CDY15707 | Canola | cytosol, plastid | 15.52 | 15.3 |
| CDY62176 | Canola | nucleus | 19.54 | 15.21 |
| CDY09349 | Canola | nucleus | 19.25 | 15.09 |
| CDY28493 | Canola | cytosol | 17.82 | 15.09 |
| CDX82682 | Canola | cytosol | 13.51 | 15.02 |
| CDY45190 | Canola | nucleus | 18.68 | 14.35 |
| CDY13683 | Canola | cytosol | 17.82 | 14.32 |
| CDY03028 | Canola | cytosol | 18.39 | 14.25 |
| CDY52395 | Canola | cytosol | 17.24 | 13.86 |
| CDY33755 | Canola | cytosol | 4.89 | 13.82 |
| CDY64780 | Canola | cytosol | 16.38 | 13.13 |
| CDY66938 | Canola | cytosol, mitochondrion | 6.61 | 13.07 |
| CDY69929 | Canola | cytosol | 15.52 | 12.95 |
| CDY63005 | Canola | cytosol | 15.52 | 12.95 |
| CDY36146 | Canola | cytosol | 15.52 | 12.95 |
| CDY12345 | Canola | cytosol | 16.67 | 12.75 |
| CDY49977 | Canola | cytosol | 16.38 | 12.13 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 12.07 | 11.9 |
| CDY53460 | Canola | cytosol | 5.75 | 11.36 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EnsemblPlants:CDX99248 | ProteinID:CDX99248 | ProteinID:CDX99248.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00107478001 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF29 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EE4E2D |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g33630D
Coordinates
chrLK031909:-:535431..536702
Molecular Weight (calculated)
38094.0 Da
IEP (calculated)
7.316
GRAVY (calculated)
-0.039
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLLEGIPE AVALRCLAHV PLHHHPNLEL VSRSWRSATR SHELFQVRNE LQSSENLLCV CAFEPENTWQ VYSPNCNRWL TLPLLPSPIR HLAHFGAVAT
101: SGKLFVLGGG SDAVDPLTGD HGGTFATDEV WCYDFVKRRW GPRAPMLVPR SMFACCVLEG KIVVAGGFTT CRKSISGAEV YDPESDVWSS IPDLHRTHNS
201: ACSGLVVKGK VHVLHKGLST TVQVLESVKL GWDVKEYGWP QGPMTVVEGV SYVLSHGVVY KQGGGDETWK MIASASEFKP RIGMAMTSLS GEVLLVGGVI
301: GPDRDNWDIK QMSEVDVLTV GSDRPVWRKV APMTKCRGTV LGCTQLTM
101: SGKLFVLGGG SDAVDPLTGD HGGTFATDEV WCYDFVKRRW GPRAPMLVPR SMFACCVLEG KIVVAGGFTT CRKSISGAEV YDPESDVWSS IPDLHRTHNS
201: ACSGLVVKGK VHVLHKGLST TVQVLESVKL GWDVKEYGWP QGPMTVVEGV SYVLSHGVVY KQGGGDETWK MIASASEFKP RIGMAMTSLS GEVLLVGGVI
301: GPDRDNWDIK QMSEVDVLTV GSDRPVWRKV APMTKCRGTV LGCTQLTM
001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
Arabidopsis Description
SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.