CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26295	Canola	mitochondrion, plastid	99.5	99.5
Bra032358.1-P	Field mustard	mitochondrion, plastid	99.25	99.25
AT1G30090.1	Thale cress	mitochondrion, plastid	91.21	91.21
KRH21075	Soybean	mitochondrion	70.6	69.38
KRH11179	Soybean	mitochondrion, plastid	70.6	69.38
PGSC0003DMT400008228	Potato	cytosol, mitochondrion, peroxisome, plastid	65.33	64.68
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	65.08	64.43
VIT_10s0003g03730.t01	Wine grape	cytosol	36.93	63.91
Os07t0153400-01	Rice	mitochondrion	59.55	58.37
TraesCS2A01G499700.1	Wheat	cytosol, mitochondrion	56.53	56.53
Zm00001d018813_P001	Maize	mitochondrion	58.04	56.34
TraesCS2D01G499800.1	Wheat	mitochondrion	57.04	56.05
EER97991	Sorghum	mitochondrion	58.29	56.04
GSMUA_Achr6P31190_001	Banana	mitochondrion	57.79	55.96
CDX76807	Canola	cytosol	33.67	36.31
CDY34765	Canola	cytosol	33.92	36.29
CDY26117	Canola	cytosol	26.88	24.6
CDY08233	Canola	mitochondrion	26.88	24.6
CDY12647	Canola	cytosol	22.36	24.59
CDY24045	Canola	mitochondrion	26.38	24.14
CDX96091	Canola	cytosol	22.61	24.13
CDY01812	Canola	cytosol	22.61	24.13
CDY22982	Canola	cytosol	20.85	23.99
CDX82306	Canola	cytosol	20.85	23.99
CDY02451	Canola	cytosol	25.88	23.68
CDY33062	Canola	mitochondrion, plastid	25.88	23.68
CDY10574	Canola	cytosol	25.88	23.68
CDY35074	Canola	cytosol	12.31	23.45
CDY52247	Canola	cytosol	18.59	23.12
CDY58259	Canola	cytosol	19.85	22.77
CDY18573	Canola	cytosol	19.85	22.7
CDX99248	Canola	cytosol	19.85	22.7
CDY15708	Canola	cytosol	19.35	22.45
CDY00415	Canola	mitochondrion	12.06	22.43
CDY01300	Canola	cytosol	12.56	22.32
CDY17172	Canola	cytosol	8.04	22.22
CDY66857	Canola	cytosol	19.85	22.19
CDY64883	Canola	golgi, plastid	22.86	22.14
CDX90085	Canola	plastid	19.1	22.03
CDY70128	Canola	cytosol	18.59	21.96
CDY03923	Canola	cytosol	18.59	21.89
CDY11811	Canola	plastid	18.84	21.74
CDY36145	Canola	cytosol	19.1	21.71
CDY01301	Canola	cytosol	8.54	21.66
CDX80156	Canola	cytosol	20.6	21.64
CDY31534	Canola	cytosol	20.35	21.6
CDY58793	Canola	cytosol	19.35	21.45
CDY51562	Canola	cytosol	19.35	21.45
CDY64382	Canola	plastid	18.09	21.05
CDY54825	Canola	cytosol	10.05	20.73
CDY15707	Canola	cytosol, plastid	17.34	19.55
CDY04697	Canola	cytosol	10.8	19.28
CDY30645	Canola	nucleus	10.8	19.28
CDY33754	Canola	nucleus	11.81	18.8
CDX82682	Canola	cytosol	14.57	18.53
CDX81755	Canola	cytosol	17.84	18.21
CDY62015	Canola	nucleus	18.59	17.83
CDX96822	Canola	extracellular, vacuole	19.1	17.59
CDY03921	Canola	cytosol, extracellular, plasma membrane	15.58	17.56
CDY49094	Canola	nucleus	18.34	17.22
CDY60836	Canola	cytosol	16.33	17.11
CDY70379	Canola	cytosol	6.78	17.09
CDX96551	Canola	cytosol	17.34	17.0
CDX73096	Canola	cytosol	17.09	16.96
CDY52764	Canola	cytosol	18.09	16.94
CDY46430	Canola	cytosol	18.09	16.9
CDX81631	Canola	nucleus	17.34	16.87
CDY16205	Canola	nucleus	17.84	16.78
CDY17425	Canola	cytosol	16.83	16.71
CDY34175	Canola	cytosol	17.09	16.55
CDY28493	Canola	cytosol	17.09	16.55
CDY65956	Canola	cytosol	7.79	16.49
CDY52395	Canola	cytosol	17.84	16.4
CDY13683	Canola	cytosol	17.84	16.4
CDX68177	Canola	cytosol	17.09	16.31
CDY09349	Canola	nucleus	18.09	16.22
CDY49979	Canola	cytosol	16.58	16.18
CDY62176	Canola	nucleus	18.09	16.11
CDX85842	Canola	cytosol	17.09	15.93
CDY66938	Canola	cytosol, mitochondrion	7.04	15.91
CDY63005	Canola	cytosol	16.58	15.83
CDY36146	Canola	cytosol	16.58	15.83
CDY69929	Canola	cytosol	16.58	15.83
CDY03028	Canola	cytosol	17.84	15.81
CDY64780	Canola	cytosol	17.09	15.67
CDY45190	Canola	nucleus	17.59	15.45
CDX90239	Canola	cytosol	15.33	15.37
CDY53460	Canola	cytosol	6.78	15.34
CDY12345	Canola	cytosol	16.83	14.73
CDY33348	Canola	cytosol	6.03	13.33
CDY35075	Canola	cytosol	5.78	12.5
CDY49977	Canola	cytosol	14.57	12.34
CDY33755	Canola	cytosol	3.77	12.2

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlants:CDX99882	ProteinID:CDX99882	ProteinID:CDX99882.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00108643001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24411
PANTHER:PTHR24411:SF27	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EB4217

Description

BnaC05g23040D

Coordinates

chrLK031914:-:1053922..1055484

Molecular Weight (calculated)

45089.3 Da

IEP (calculated)

8.093

GRAVY (calculated)

-0.168

Length

398 amino acids

Sequence
(BLAST)

001: MQRVRVSSQR AAVHKLGDSQ MTLSPKFRVA ASVQSPLFDR SSEQELSLTG EPLIPGLPDD VALNCLLRVP VESHVSSRSV CKRWHFLFCA KETFFARRKE
101: FGFKEPWLFV VGFSRCTGKI QWKVLDLRNL TWHEIPAMPC RDKVCPHGFR SVSMPKEGTM FVCGGMVSDS DCPLDLVLKY DMVRNHWTVT NKMITARSFF
201: GSGVIDGKIY AAGGNSADMF ELDTAEVLNP LDGKWRSVSN MVTQMASYDA AVLNGKLLVT EGWLWPFFVS PRGQVYDPRT DQWETMAMGL REGWTGTSVV
301: IYDRLFIVSE LERMKMKVYD SVTDSWETVN GPELPEKICR PFAVNCYGNR VYVVGRNLHL AVGSIWRSES KFGVRWEVVE SPERYGDLTP SNSQILFA

Best Arabidopsis Sequence Match ( AT1G30090.1 )
(BLAST)

001: MQRVRVSSQR AVVHKLGDSQ MTLSPKFRVA ASIQSTLFDR SSELELSLRG EPLIPGLPDD VALNCLLRVP VQSHVSSKSV CKRWHLLFGT KETFFAKRKE
101: FGFKDPWLFV VGFSRCTGKI QWKVLDLRNL TWHEIPAMPC RDKVCPHGFR SVSMPREGTM FVCGGMVSDS DCPLDLVLKY DMVKNHWTVT NKMITARSFF
201: ASGVIDGMIY AAGGNAADLY ELDCAEVLNP LDGNWRPVSN MVAHMASYDT AVLNGKLLVT EGWLWPFFVS PRGQVYDPRT DQWETMSMGL REGWTGTSVV
301: IYDRLFIVSE LERMKMKVYD PVTDSWETIN GPELPEQICR PFAVNCYGNR VYVVGRNLHL AVGNIWQSEN KFAVRWEVVE SPERYADITP SNSQILFA

Arabidopsis Description

F-box/kelch-repeat protein At1g30090 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z0]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.