CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005497.1-P	Field mustard	cytosol	100.0	100.0
CDY35074	Canola	cytosol	77.78	53.59
Solyc07g042960.1.1	Tomato	cytosol, mitochondrion	38.19	31.25
AT1G16250.2	Thale cress	cytosol	66.67	25.07
CDX81755	Canola	cytosol	62.5	23.08
CDX96822	Canola	extracellular, vacuole	62.5	20.83
CDY01301	Canola	cytosol	18.75	17.2
GSMUA_Achr2P18470_001	Banana	cytosol	45.83	15.49
CDY04697	Canola	cytosol	17.36	11.21
CDY30645	Canola	nucleus	16.67	10.76
CDY22982	Canola	cytosol	22.22	9.25
CDY58259	Canola	cytosol	22.22	9.22
CDY18573	Canola	cytosol	22.22	9.2
CDX82306	Canola	cytosol	21.53	8.96
CDX99248	Canola	cytosol	21.53	8.91
CDY12647	Canola	cytosol	22.22	8.84
CDY33754	Canola	nucleus	15.28	8.8
CDY26295	Canola	mitochondrion, plastid	22.92	8.29
CDY34765	Canola	cytosol	20.83	8.06
CDX96091	Canola	cytosol	20.83	8.04
CDY01812	Canola	cytosol	20.83	8.04
CDX99882	Canola	mitochondrion, plastid	22.22	8.04
CDY64883	Canola	golgi, plastid	22.22	7.79
CDX76807	Canola	cytosol	19.44	7.59
CDY24045	Canola	mitochondrion	22.92	7.59
CDY52247	Canola	cytosol	16.67	7.5
CDY08233	Canola	mitochondrion	22.22	7.36
CDY33062	Canola	mitochondrion, plastid	22.22	7.36
CDY26117	Canola	cytosol	22.22	7.36
CDY10574	Canola	cytosol	21.53	7.13
CDY02451	Canola	cytosol	21.53	7.13
CDY51562	Canola	cytosol	17.36	6.96
CDY15707	Canola	cytosol, plastid	16.67	6.8
CDY58793	Canola	cytosol	16.67	6.69
CDY31534	Canola	cytosol	17.36	6.67
CDX80156	Canola	cytosol	17.36	6.6
CDY52764	Canola	cytosol	19.44	6.59
CDY46430	Canola	cytosol	19.44	6.57
CDY03923	Canola	cytosol	15.28	6.51
CDY64382	Canola	plastid	15.28	6.43
CDY15708	Canola	cytosol	15.28	6.41
CDY16205	Canola	nucleus	18.75	6.38
CDX90085	Canola	plastid	15.28	6.38
CDY11811	Canola	plastid	15.28	6.38
CDY03921	Canola	cytosol, extracellular, plasma membrane	14.58	5.95
CDX96551	Canola	cytosol	16.67	5.91
CDY60836	Canola	cytosol	15.28	5.79
CDX73096	Canola	cytosol	15.97	5.74
CDY36145	Canola	cytosol	13.89	5.71
CDY70128	Canola	cytosol	13.19	5.64
CDY03028	Canola	cytosol	17.36	5.57
CDY45190	Canola	nucleus	17.36	5.52
CDY09349	Canola	nucleus	16.67	5.41
CDX81631	Canola	nucleus	15.28	5.38
CDY62176	Canola	nucleus	16.67	5.37
CDY62015	Canola	nucleus	15.28	5.3
CDY17425	Canola	cytosol	14.58	5.24
CDY49094	Canola	nucleus	15.28	5.19
CDY66857	Canola	cytosol	12.5	5.06
CDX68177	Canola	cytosol	14.58	5.04
CDX85842	Canola	cytosol	14.58	4.92
CDX90239	Canola	cytosol	13.19	4.79
CDY12345	Canola	cytosol	14.58	4.62
CDY49979	Canola	cytosol	12.5	4.41
CDY64780	Canola	cytosol	13.19	4.38
CDY69929	Canola	cytosol	12.5	4.32
CDY36146	Canola	cytosol	12.5	4.32
CDY63005	Canola	cytosol	12.5	4.32
CDY65956	Canola	cytosol	5.56	4.26
CDY52395	Canola	cytosol	12.5	4.16
CDY13683	Canola	cytosol	12.5	4.16
CDY49977	Canola	cytosol	12.5	3.83
CDY28493	Canola	cytosol	10.42	3.65
CDY34175	Canola	cytosol	9.72	3.41
CDX82682	Canola	cytosol	6.94	3.19
CDY70379	Canola	cytosol	2.78	2.53
CDY33348	Canola	cytosol	0.0	0.0
CDY00415	Canola	mitochondrion	0.0	0.0
CDY33755	Canola	cytosol	0.0	0.0
CDY66938	Canola	cytosol, mitochondrion	0.0	0.0
CDY01300	Canola	cytosol	0.0	0.0
CDY35075	Canola	cytosol	0.0	0.0
CDY54825	Canola	cytosol	0.0	0.0
Solyc07g042950.1.1	Tomato	cytosol	0.0	0.0
CDY53460	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY17172	EnsemblPlantsGene:GSBRNA2T00095234001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR24414	PANTHER:PTHR24414:SF41	PFAM:PF00646
ProteinID:CDY17172	ProteinID:CDY17172.1	SUPFAM:SSF81383	UniParc:UPI00025473FC	UniProt:A0A078FWQ6	MapMan:35.1

Description

BnaA05g10160DBnaA05g10160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWQ6]

Coordinates

chrLK032071:-:296703..297309

Molecular Weight (calculated)

16565.6 Da

IEP (calculated)

6.491

GRAVY (calculated)

-0.278

Length

144 amino acids

Sequence
(BLAST)

001: MRRVPNGLPV KTTFVQLMET KEQSIISGLP DDLALRCIAK LSHGYHGTLE CVSKDWRDLV RSEVYSCYKA RNGWSGNWLF AHSNNQWVAY DSDADRWHPL
101: PRNEAIQDCW DHSGFACVCV SSCLLMIKDC YVSSFPYEEH VVVY

Best Arabidopsis Sequence Match ( AT1G16250.1 )
(BLAST)

001: MESIEQSIIP GLPDDLALRC IAKLSHGYHG VLECVSRGWR DLVRGADYSC YKARNGWSGS WLFVLTERSK NQWVAYDPEA DRWHPLPRTR AVQDGWHHSG
101: FACVCVSNCL LVIGGCYAPS VSSFPHQKPV VTKDVMRFDP FKKQWKMVAS MRTPRTHFAC TSVSGKVYVA GGRNLTHSRG IPSAEVYDPV ADRWEELPAM
201: PRPQMDCSGL SYRGCFHVLS DQVGFAEQNS SEVFNPRDMT WSTVEDVWPF SRAMQFAVQV MKNDRVYTIV DWGESLIKTR DTDEGEWYNV GSVPSVVLPN
301: HPRELEAFGY GFAALRNELY VIGGKVLKWE ESGAGRFDIV RLPVVRVCNP LDRPLNWRET KPMCIPAGGS IIGCVSLEES SPP

Arabidopsis Description

F-box/kelch-repeat protein At1g16250 [Source:UniProtKB/Swiss-Prot;Acc:Q0WW40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.