Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34765 | Canola | cytosol | 97.29 | 96.51 |
| AT2G24540.1 | Thale cress | cytosol | 80.76 | 80.11 |
| VIT_04s0008g02380.t01 | Wine grape | cytosol, peroxisome, plastid | 54.47 | 54.32 |
| KRH61941 | Soybean | plastid | 43.36 | 45.58 |
| GSMUA_AchrUn_... | Banana | cytosol | 43.63 | 45.1 |
| KRH52601 | Soybean | extracellular, golgi | 48.51 | 44.86 |
| Zm00001d046921_P001 | Maize | cytosol | 39.3 | 36.8 |
| TraesCS7D01G483900.1 | Wheat | cytosol | 37.94 | 36.55 |
| Os06t0655500-01 | Rice | cytosol | 37.67 | 36.2 |
| EER90147 | Sorghum | cytosol | 38.48 | 36.13 |
| Zm00001d046922_P001 | Maize | cytosol | 37.4 | 35.84 |
| TraesCS7A01G496600.1 | Wheat | cytosol | 37.4 | 35.84 |
| TraesCS5A01G544300.1 | Wheat | extracellular, plasma membrane | 26.83 | 34.62 |
| CDX99882 | Canola | mitochondrion, plastid | 36.31 | 33.67 |
| CDY26295 | Canola | mitochondrion, plastid | 36.31 | 33.67 |
| CDX99248 | Canola | cytosol | 24.39 | 25.86 |
| CDY18573 | Canola | cytosol | 24.39 | 25.86 |
| CDX82306 | Canola | cytosol | 24.12 | 25.72 |
| CDY22982 | Canola | cytosol | 23.85 | 25.43 |
| CDY58259 | Canola | cytosol | 23.85 | 25.36 |
| CDY01300 | Canola | cytosol | 13.82 | 22.77 |
| CDY51562 | Canola | cytosol | 20.87 | 21.45 |
| CDY58793 | Canola | cytosol | 20.6 | 21.17 |
| CDY30645 | Canola | nucleus | 12.2 | 20.18 |
| CDY26117 | Canola | cytosol | 23.31 | 19.77 |
| CDY01301 | Canola | cytosol | 8.4 | 19.75 |
| CDY00415 | Canola | mitochondrion | 11.38 | 19.63 |
| CDY35074 | Canola | cytosol | 11.11 | 19.62 |
| CDY08233 | Canola | mitochondrion | 23.04 | 19.54 |
| CDY33062 | Canola | mitochondrion, plastid | 23.04 | 19.54 |
| CDY17172 | Canola | cytosol | 7.59 | 19.44 |
| CDY12647 | Canola | cytosol | 18.97 | 19.34 |
| CDY10574 | Canola | cytosol | 22.76 | 19.31 |
| CDY24045 | Canola | mitochondrion | 22.76 | 19.31 |
| CDY04697 | Canola | cytosol | 11.65 | 19.28 |
| CDX80156 | Canola | cytosol | 19.78 | 19.26 |
| CDX81755 | Canola | cytosol | 20.33 | 19.23 |
| CDY31534 | Canola | cytosol | 19.51 | 19.2 |
| CDY66857 | Canola | cytosol | 18.43 | 19.1 |
| CDY02451 | Canola | cytosol | 22.49 | 19.08 |
| CDX96091 | Canola | cytosol | 19.24 | 19.03 |
| CDY70379 | Canola | cytosol | 8.13 | 18.99 |
| CDX90085 | Canola | plastid | 17.34 | 18.55 |
| CDY01812 | Canola | cytosol | 18.7 | 18.5 |
| CDY11811 | Canola | plastid | 17.07 | 18.26 |
| CDY36145 | Canola | cytosol | 17.07 | 18.0 |
| CDY70128 | Canola | cytosol | 16.26 | 17.8 |
| CDY15708 | Canola | cytosol | 16.53 | 17.78 |
| CDY03923 | Canola | cytosol | 16.26 | 17.75 |
| CDY54825 | Canola | cytosol | 9.21 | 17.62 |
| CDY33754 | Canola | nucleus | 11.92 | 17.6 |
| CDY64382 | Canola | plastid | 16.26 | 17.54 |
| CDY64883 | Canola | golgi, plastid | 19.51 | 17.52 |
| CDY52247 | Canola | cytosol | 15.18 | 17.5 |
| CDX96822 | Canola | extracellular, vacuole | 20.05 | 17.13 |
| CDY52764 | Canola | cytosol | 19.24 | 16.71 |
| CDY46430 | Canola | cytosol | 19.24 | 16.67 |
| CDY62015 | Canola | nucleus | 18.43 | 16.39 |
| CDX81631 | Canola | nucleus | 18.16 | 16.38 |
| CDY49094 | Canola | nucleus | 18.7 | 16.27 |
| CDY16205 | Canola | nucleus | 18.43 | 16.08 |
| CDX96551 | Canola | cytosol | 17.62 | 16.01 |
| CDY33348 | Canola | cytosol | 7.59 | 15.56 |
| CDY60836 | Canola | cytosol | 15.99 | 15.53 |
| CDX73096 | Canola | cytosol | 16.8 | 15.46 |
| CDX68177 | Canola | cytosol | 17.34 | 15.35 |
| CDX82682 | Canola | cytosol | 12.74 | 15.02 |
| CDY15707 | Canola | cytosol, plastid | 14.36 | 15.01 |
| CDX85842 | Canola | cytosol | 17.34 | 14.99 |
| CDY17425 | Canola | cytosol | 16.26 | 14.96 |
| CDY62176 | Canola | nucleus | 17.62 | 14.54 |
| CDY03028 | Canola | cytosol | 17.62 | 14.48 |
| CDY09349 | Canola | nucleus | 17.34 | 14.41 |
| CDY65956 | Canola | cytosol | 7.32 | 14.36 |
| CDY45190 | Canola | nucleus | 17.62 | 14.35 |
| CDY49979 | Canola | cytosol | 15.72 | 14.22 |
| CDY28493 | Canola | cytosol | 15.72 | 14.11 |
| CDY34175 | Canola | cytosol | 15.45 | 13.87 |
| CDY13683 | Canola | cytosol | 16.26 | 13.86 |
| CDX90239 | Canola | cytosol | 14.63 | 13.6 |
| CDY52395 | Canola | cytosol | 15.72 | 13.39 |
| CDY64780 | Canola | cytosol | 14.91 | 12.67 |
| CDY69929 | Canola | cytosol | 13.82 | 12.23 |
| CDY63005 | Canola | cytosol | 13.82 | 12.23 |
| CDY36146 | Canola | cytosol | 13.82 | 12.23 |
| CDY33755 | Canola | cytosol | 4.07 | 12.2 |
| CDY35075 | Canola | cytosol | 5.96 | 11.96 |
| CDY12345 | Canola | cytosol | 14.36 | 11.65 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 11.11 | 11.61 |
| CDY66938 | Canola | cytosol, mitochondrion | 5.15 | 10.8 |
| CDY53460 | Canola | cytosol | 4.88 | 10.23 |
| CDY49977 | Canola | cytosol | 13.01 | 10.21 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EnsemblPlants:CDX76807 | ProteinID:CDX76807 | ProteinID:CDX76807.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00127308001 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF31 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EF2D97 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g33930D
Coordinates
chrLK031808:-:1197367..1198476
Molecular Weight (calculated)
40888.4 Da
IEP (calculated)
6.525
GRAVY (calculated)
-0.288
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MTETQTSIDQ QEEEETRTKT KPLIPGLPNE IAELCLLRLP YPYHALLRSV SSSWNTTITN PSFLLSKQSL SISSPYLFVF SFNKSTAKVQ WQSLDLSSGR
101: WFVLPPMPSS FAKISSPHAL SCASTPRQGK LFVLGGGESS RSAVVYTALT NRWSLASPML SPRTYFVSGN LNGKITAVGG SLDGGGEATK DVESYDPESD
201: TWKESARLPM VLAKYDSAVI GKEMLVTEGW AWPFMFPPMG HVYDSDKDTW REMSGGMKEG WTGVSVVVRG RLFVISEHGD FPMKVYSSED DTWRYVSGEK
301: LPRKTMRRPF AVAGVEDRVF VVGEGLNVAE GRVDEGQNGE FSVEWRMIAS SSHQARTQFS PASCHVLYV
101: WFVLPPMPSS FAKISSPHAL SCASTPRQGK LFVLGGGESS RSAVVYTALT NRWSLASPML SPRTYFVSGN LNGKITAVGG SLDGGGEATK DVESYDPESD
201: TWKESARLPM VLAKYDSAVI GKEMLVTEGW AWPFMFPPMG HVYDSDKDTW REMSGGMKEG WTGVSVVVRG RLFVISEHGD FPMKVYSSED DTWRYVSGEK
301: LPRKTMRRPF AVAGVEDRVF VVGEGLNVAE GRVDEGQNGE FSVEWRMIAS SSHQARTQFS PASCHVLYV
001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
Arabidopsis Description
AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.