Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G544300.1 | Wheat | extracellular, plasma membrane | 73.25 | 98.6 |
| TraesCS7D01G483900.1 | Wheat | cytosol | 96.88 | 97.39 |
| EER90147 | Sorghum | cytosol | 85.19 | 83.46 |
| Zm00001d046922_P001 | Maize | cytosol | 82.86 | 82.86 |
| Os06t0655500-01 | Rice | cytosol | 82.6 | 82.81 |
| Zm00001d046921_P001 | Maize | cytosol | 83.38 | 81.47 |
| GSMUA_AchrUn_... | Banana | cytosol | 49.09 | 52.94 |
| VIT_04s0008g02380.t01 | Wine grape | cytosol, peroxisome, plastid | 40.26 | 41.89 |
| KRH61941 | Soybean | plastid | 34.81 | 38.18 |
| KRH52601 | Soybean | extracellular, golgi | 39.22 | 37.84 |
| CDX76807 | Canola | cytosol | 35.84 | 37.4 |
| Bra007843.1-P | Field mustard | cytosol | 36.1 | 37.37 |
| CDY34765 | Canola | cytosol | 36.1 | 37.37 |
| AT2G24540.1 | Thale cress | cytosol | 34.29 | 35.48 |
| TraesCS2A01G499700.1 | Wheat | cytosol, mitochondrion | 34.81 | 33.67 |
| TraesCS6A01G175700.1 | Wheat | plastid | 27.27 | 24.82 |
| TraesCS7A01G020100.1 | Wheat | cytosol, plastid | 24.94 | 21.05 |
| TraesCS4A01G472100.1 | Wheat | cytosol | 24.94 | 20.96 |
| TraesCS2A01G280900.1 | Wheat | mitochondrion | 20.52 | 20.63 |
| TraesCS3A01G446400.1 | Wheat | cytosol, plastid | 20.52 | 20.52 |
| TraesCS4A01G487800.1 | Wheat | cytosol | 13.25 | 19.77 |
| TraesCS4A01G493800.1 | Wheat | cytosol | 12.47 | 19.12 |
| TraesCS6A01G037900.1 | Wheat | cytosol | 17.92 | 19.01 |
| TraesCS4A01G020200.1 | Wheat | cytosol | 21.04 | 18.84 |
| TraesCS3A01G534600.1 | Wheat | cytosol | 20.78 | 18.56 |
| TraesCS7A01G004600.1 | Wheat | cytosol | 17.14 | 18.13 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 14.29 | 17.86 |
| TraesCS4A01G492300.1 | Wheat | cytosol, golgi, plastid | 16.62 | 16.62 |
| TraesCS4A01G489600.1 | Wheat | cytosol | 16.1 | 16.4 |
| TraesCS4A01G489300.1 | Wheat | cytosol | 16.1 | 16.27 |
| TraesCS4A01G016200.1 | Wheat | cytosol | 17.4 | 15.55 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 15.58 | 14.12 |
| TraesCS2A01G462600.1 | Wheat | cytosol | 15.06 | 12.92 |
| TraesCS4A01G493200.1 | Wheat | cytosol, plasma membrane | 13.77 | 11.18 |
| TraesCS4A01G491100.1 | Wheat | cytosol | 15.06 | 11.03 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G496600.1 | EnsemblPlantsGene:TraesCS7A01G496600 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF31 | PFAM:PF00646 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 |
| SUPFAM:SSF81383 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:686244275..686245939
Molecular Weight (calculated)
40769.2 Da
IEP (calculated)
4.969
GRAVY (calculated)
-0.087
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSSACKQQ VLGAGGEEAR EEEGAMELIP GLPEEVAEKC LLHLPFLYHR LFRTVSSNWN RFLTDAPGAA AKTKGSAPPA ATVSLSLPFL FAFAFDPVSR
101: RLQCQALDPF SRRWLLLPPV PCGAAAGSFA VVGLPARGEI YVIGGVEEGG DKAVSSVAVY SAATNGWGQV AGMRTARGYM AAGEVGGRVV VAGEDGEAEV
201: FDPEAGRWSP AAPRGGAAVA RYDAAAAGGK LYVTEGWAWP FERAPRGAVY DAAADAWSDM ARGMREGWTG SCAVSGGRMY IVAEYGEWRL KRYDEPRDEW
301: RMVAGGGVPQ EVRRPHVVAG QLEEVGGGRR RIYVVGAGLD VAVGTVVSAA NHGAGTEEER VEWEVVKGPE EFVGLAPCNA QVLYA
101: RLQCQALDPF SRRWLLLPPV PCGAAAGSFA VVGLPARGEI YVIGGVEEGG DKAVSSVAVY SAATNGWGQV AGMRTARGYM AAGEVGGRVV VAGEDGEAEV
201: FDPEAGRWSP AAPRGGAAVA RYDAAAAGGK LYVTEGWAWP FERAPRGAVY DAAADAWSDM ARGMREGWTG SCAVSGGRMY IVAEYGEWRL KRYDEPRDEW
301: RMVAGGGVPQ EVRRPHVVAG QLEEVGGGRR RIYVVGAGLD VAVGTVVSAA NHGAGTEEER VEWEVVKGPE EFVGLAPCNA QVLYA
001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
Arabidopsis Description
AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.