Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046278 | Potato | cytosol | 43.68 | 98.7 |
| Bra019453.1-P | Field mustard | cytosol | 84.48 | 98.66 |
| CDY04474 | Canola | cytosol | 84.48 | 98.66 |
| Bra012037.1-P | Field mustard | cytosol | 84.48 | 98.66 |
| CDY56411 | Canola | cytosol | 84.48 | 98.66 |
| Bra020155.1-P | Field mustard | cytosol | 83.91 | 97.99 |
| Bra006595.1-P | Field mustard | cytosol | 83.91 | 97.99 |
| Os01t0279300-01 | Rice | cytosol, plasma membrane, plastid | 83.91 | 97.99 |
| PGSC0003DMT400018569 | Potato | cytosol | 83.91 | 97.99 |
| Bra002368.1-P | Field mustard | cytosol | 83.91 | 97.99 |
| PGSC0003DMT400070437 | Potato | cytosol | 83.91 | 97.99 |
| Solyc10g077010.1.1 | Tomato | cytosol | 83.91 | 97.99 |
| Solyc11g072240.1.1 | Tomato | cytosol | 83.91 | 97.99 |
| Solyc12g099990.1.1 | Tomato | nucleus | 83.91 | 97.99 |
| PGSC0003DMT400058435 | Potato | cytosol | 83.33 | 97.32 |
| Solyc01g008950.2.1 | Tomato | nucleus | 83.33 | 97.32 |
| Solyc10g081170.1.1 | Tomato | extracellular | 83.33 | 97.32 |
| VIT_08s0040g00470.t01 | Wine grape | cytosol | 83.33 | 97.32 |
| CDY65072 | Canola | cytosol | 83.33 | 97.32 |
| CDX92401 | Canola | cytosol | 74.71 | 97.01 |
| Bra000214.1-P | Field mustard | cytosol | 82.76 | 96.64 |
| Bra003251.1-P | Field mustard | cytosol | 82.76 | 96.64 |
| AT5G21274.1 | Thale cress | cytosol | 82.76 | 96.64 |
| Bra014671.1-P | Field mustard | cytosol | 82.76 | 96.64 |
| GSMUA_Achr6P15990_001 | Banana | cytosol | 82.76 | 96.64 |
| AT3G56800.1 | Thale cress | cytosol | 82.76 | 96.64 |
| Bra025438.1-P | Field mustard | cytosol | 62.64 | 96.46 |
| PGSC0003DMT400054299 | Potato | cytosol | 62.64 | 96.46 |
| CDY55678 | Canola | cytosol | 82.18 | 95.97 |
| KRG94975 | Soybean | nucleus | 82.18 | 95.97 |
| GSMUA_Achr6P23670_001 | Banana | cytosol | 82.18 | 95.97 |
| Bra007269.1-P | Field mustard | cytosol | 82.18 | 95.97 |
| CDY12321 | Canola | cytosol | 79.89 | 95.86 |
| Bra034981.1-P | Field mustard | cytosol | 79.89 | 95.86 |
| CDX96148 | Canola | cytosol | 81.61 | 95.3 |
| Bra004166.1-P | Field mustard | cytosol | 81.61 | 95.3 |
| VIT_06s0009g01910.t01 | Wine grape | cytosol | 83.33 | 94.77 |
| TraesCS3D01G194500.2 | Wheat | cytosol | 86.21 | 94.34 |
| CDY27651 | Canola | cytosol | 81.03 | 94.0 |
| CDX99690 | Canola | cytosol | 80.46 | 93.96 |
| TraesCS3A01G191900.1 | Wheat | cytosol | 84.48 | 92.45 |
| AT1G66410.2 | Thale cress | cytosol | 82.18 | 89.94 |
| AT2G41110.2 | Thale cress | cytosol | 82.76 | 89.44 |
| KRH18664 | Soybean | cytosol | 71.26 | 88.57 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 59.2 | 84.43 |
| TraesCS2B01G113800.2 | Wheat | cytosol | 84.48 | 84.0 |
| AT5G37780.3 | Thale cress | cytosol | 82.76 | 82.29 |
| Bra034317.1-P | Field mustard | cytosol | 83.33 | 81.01 |
| CDY48191 | Canola | cytosol | 83.33 | 81.01 |
| CDX75970 | Canola | cytosol | 52.87 | 80.7 |
| CDX77060 | Canola | cytosol | 83.33 | 80.56 |
| AT2G27030.3 | Thale cress | cytosol | 82.76 | 79.56 |
| TraesCS3B01G365900.1 | Wheat | cytosol | 78.74 | 74.86 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 73.56 | 73.99 |
| KRG89812 | Soybean | cytosol, mitochondrion | 70.11 | 73.94 |
| CDY30947 | Canola | cytosol | 83.91 | 69.86 |
| AT3G43810.2 | Thale cress | cytosol | 82.76 | 67.29 |
| CDY21220 | Canola | cytosol | 83.33 | 65.61 |
| CDY57144 | Canola | cytosol | 54.6 | 65.07 |
| TraesCS5B01G387200.1 | Wheat | cytosol | 57.47 | 64.52 |
| TraesCS5B01G137100.1 | Wheat | cytosol | 62.64 | 60.56 |
| TraesCS5B01G059900.1 | Wheat | cytosol | 56.32 | 58.33 |
| AT2G41090.1 | Thale cress | cytosol | 52.3 | 47.64 |
| TraesCS7B01G217200.1 | Wheat | cytosol, plastid | 39.66 | 46.62 |
| TraesCS1B01G319300.1 | Wheat | cytosol | 38.51 | 44.67 |
| TraesCS4B01G131100.1 | Wheat | cytosol | 56.9 | 42.86 |
| TraesCS2B01G192400.1 | Wheat | cytosol, mitochondrion | 37.93 | 39.29 |
| TraesCS7B01G412100.1 | Wheat | cytosol | 38.51 | 37.02 |
| TraesCS1B01G446400.1 | Wheat | plastid | 36.21 | 36.0 |
| TraesCS1B01G208700.1 | Wheat | cytosol | 36.21 | 32.98 |
| AT2G41100.1 | Thale cress | cytosol | 50.0 | 26.85 |
| TraesCS3B01G246100.1 | Wheat | cytosol | 35.63 | 24.31 |
| TraesCS5B01G387100.1 | Wheat | mitochondrion, nucleus | 1.15 | 1.46 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G219900.1 | EnsemblPlantsGene:TraesCS3B01G219900 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF250 |
| PFAM:PF13499 | PFAM:PF13833 | PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 |
| TIGR:cd00051 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:266563877..266566888
Molecular Weight (calculated)
19561.0 Da
IEP (calculated)
3.921
GRAVY (calculated)
-0.408
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQLTDDQI AEFKEAFSLF DKDGDVLVND RPGTICWIVL CFEGSRVSIP GCITTKELGT VMRSLGQNPT EAELQDMINE VDADGNGTID FPEFLNLMAR
101: KMKDTDSEEE LKEAFRVFDK DQNGFISAAE LRHVMTNLGE KLTDEEVDEM VREADVDGDG QINYDEFVKV MMAK
101: KMKDTDSEEE LKEAFRVFDK DQNGFISAAE LRHVMTNLGE KLTDEEVDEM VREADVDGDG QINYDEFVKV MMAK
001: MADQLTDEQI SEFKEAFSLF DKDGDVFVLS DLGFDFKRLS NCLETTPELS HGCITTKELG TVMRSLGQNP TEAELQDMIN EVDADGNGTI DFPEFLNLMA
101: KKMKDTDSEE ELKEAFRVFD KDQNGFISAA ELRHVMTNLG EKLTDEEVEE MIREADVDGD GQINYEEFVK IMMAK
101: KKMKDTDSEE ELKEAFRVFD KDQNGFISAA ELRHVMTNLG EKLTDEEVEE MIREADVDGD GQINYEEFVK IMMAK
Arabidopsis Description
CAM1Calmodulin 1 [Source:UniProtKB/TrEMBL;Acc:F4K8M2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.