Factsheet for TraesCS3A01G306400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G308700.1
TraesCS1A01G308800.1
TraesCS1B01G319300.1
TraesCS1D01G308000.1
TraesCS2A01G368500.1
TraesCS2B01G113800.2
TraesCS2B01G385700.2
TraesCS2D01G365300.2
TraesCS3A01G184500.1
TraesCS3A01G191900.1
TraesCS3A01G335000.1
TraesCS3B01G219900.1
TraesCS3B01G365900.1
TraesCS3D01G188600.1
TraesCS3D01G194500.2
TraesCS3D01G328300.1
TraesCS4B01G131100.1
TraesCS4D01G126100.1
TraesCS5A01G057100.1
TraesCS5A01G057200.1
TraesCS5A01G139700.1
TraesCS5B01G059900.1
TraesCS5B01G137100.1
TraesCS5D01G068000.1
TraesCS5D01G068100.1
TraesCS5D01G153400.1
TraesCS6A01G237600.1
TraesCS6A01G378000.1
TraesCS6B01G266100.1
TraesCS6B01G415700.2
TraesCS6D01G220300.1
TraesCS6D01G362500.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29240.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT1G29240.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT1G29240.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT1G29240.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT1G29240.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT1G29240.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT1G29240.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT1G29240.1	TraesCS7D01G296400.1	AT3G60600.1	21798944
AT4G18630.1	TraesCS1A01G308700.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS1A01G308800.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS1B01G319300.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS1D01G308000.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS2B01G113800.2	AT5G21274.1	17360592
AT4G18630.1	TraesCS3A01G184500.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3A01G191900.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3A01G335000.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3B01G219900.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3B01G365900.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3D01G188600.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS3D01G194500.2	AT5G21274.1	17360592
AT4G18630.1	TraesCS3D01G328300.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS4B01G131100.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS4D01G126100.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5A01G057100.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5A01G057200.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5A01G139700.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5B01G059900.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5B01G137100.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5D01G068000.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5D01G068100.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS5D01G153400.1	AT5G21274.1	17360592
AT4G18630.1	TraesCS6A01G378000.1	AT5G43320.1	21798944
AT4G18630.1	TraesCS6B01G415700.2	AT5G43320.1	21798944
AT4G18630.1	TraesCS6D01G362500.1	AT5G43320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G295500.1	Wheat	nucleus	84.23	87.59
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	80.4	79.38
Os01t0758900-01	Rice	nucleus	58.1	59.97
Zm00001d043395_P002	Maize	nucleus	55.54	57.5
EES01501	Sorghum	nucleus	53.41	54.65
Solyc07g055140.2.1	Tomato	nucleus	15.2	30.4
GSMUA_Achr1P04800_001	Banana	nucleus	22.44	30.33
GSMUA_Achr9P06400_001	Banana	nucleus	27.7	29.32
GSMUA_Achr6P26820_001	Banana	nucleus	25.57	27.44
KRH22276	Soybean	nucleus	6.11	25.9
KRH74883	Soybean	nucleus	11.36	25.81
KRH04495	Soybean	nucleus	11.08	25.0
CDY15640	Canola	mitochondrion, nucleus, plastid	16.05	24.78
Bra021994.1-P	Field mustard	nucleus	14.35	24.57
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	16.9	24.49
CDY43328	Canola	nucleus	17.76	24.46
VIT_12s0028g02110.t01	Wine grape	nucleus	23.44	24.34
CDX90178	Canola	nucleus	17.47	24.16
AT2G30990.4	Thale cress	nucleus	20.31	24.11
CDX94655	Canola	mitochondrion	16.62	24.07
CDY52694	Canola	nucleus	15.91	23.83
CDY06031	Canola	nucleus	14.63	23.57
Bra010842.1-P	Field mustard	nucleus	17.47	23.56
PGSC0003DMT400052652	Potato	nucleus	19.6	23.47
KRH11026	Soybean	nucleus	22.44	23.34
CDY63140	Canola	nucleus	16.05	23.11
AT2G34170.3	Thale cress	nucleus	17.05	22.94
AT1G29240.1	Thale cress	nucleus	18.75	22.88
CDY17227	Canola	nucleus	15.62	22.45
CDY58982	Canola	nucleus	16.9	22.24
CDX87761	Canola	nucleus	13.64	22.17
PGSC0003DMT400026504	Potato	nucleus	21.59	21.9
Solyc02g076680.2.1	Tomato	nucleus	21.59	21.87
Bra021686.1-P	Field mustard	nucleus	16.62	21.87
CDY53997	Canola	plastid	13.07	21.85
KRH58978	Soybean	nucleus	20.74	21.82
AT4G18630.1	Thale cress	nucleus	14.77	21.71
CDX99449	Canola	nucleus	14.49	21.61
CDY10767	Canola	nucleus	13.07	21.6
CDY01559	Canola	nucleus, plastid	13.64	21.52
KRH42875	Soybean	nucleus	20.6	21.48
PGSC0003DMT400039770	Potato	cytosol	17.47	21.47
CDX78880	Canola	nucleus	14.49	21.38
Bra013335.1-P	Field mustard	nucleus	14.35	21.26
Bra005448.1-P	Field mustard	nucleus	15.77	21.06
Bra012583.1-P	Field mustard	plastid	13.49	21.02
KRH27055	Soybean	nucleus	16.48	20.68
CDX97772	Canola	extracellular, vacuole	16.34	20.57
Solyc12g013960.1.1	Tomato	nucleus	17.9	20.52
KRH21261	Soybean	cytosol, mitochondrion, plastid	11.22	19.95
KRH55736	Soybean	nucleus	18.89	19.36
Bra018284.1-P	Field mustard	nucleus	13.35	19.34
KRH25783	Soybean	nucleus	19.32	19.24
AT5G45850.1	Thale cress	nucleus	12.07	19.1
VIT_10s0003g01370.t01	Wine grape	plastid	21.02	18.69

Protein Annotations

EnsemblPlants:TraesCS3A01G306400.2	EnsemblPlantsGene:TraesCS3A01G306400	InterPro:DUF688	PANTHER:PTHR33671	PANTHER:PTHR33671:SF5	PFAM:PF05097
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:543178307..543180507

Molecular Weight (calculated)

76353.8 Da

IEP (calculated)

6.912

GRAVY (calculated)

-0.712

Length

704 amino acids

Sequence
(BLAST)

001: MAEAGKRVDL AAPLRSARLP YHKADLDSGP VRHPGAVPFV WEHSPGQPKS VRTRRPPPPS PSQPRLEESG ATRYHDALGE RERDRALPNG AAPAPAPAVP
101: RTGAAEREAE RAEVEPRKEA TTPDVLSVAD VLRKEEEEDA GDDEERFSDA LDTLSRTESF TVNCSVSGLS GLSGVPDRPA GATASAAEPG ARGFMMDRFL
201: PAAQAVAVGS PQYTFRKASA AGSTGNSARE HAHAAAANWR MGSDDDRVRR TPVQLPYQNL PPNYLSCNYP RRDEHGEEEV EEDDDDFDVH STRGFASKGC
301: GLLPGLCVKT SLLLLNPMPM MKGGKASRAG RGRGLASKGR GQKAPSPLAR SSQRKNLGCD SNGQYWEEVY KHKLEQKYIN QGEDRRSKLT SESNHLTFWS
401: DSQTGDGSSP FRHSIGGGMS PYRRDVALSP SHKANGSFEV RDKDEKMSRS NGSSSLGIDH DHGSLLGSDH SSLKGSSSMS SGVDRTLHED SMDHRSGIDS
501: ETSQLTVVLD PKASLNSGCD VQHGGRQIVR SNSIVEAQDN DTLTEKIAKV PESASLIPSG NAGSVTLDDR KSHDSSQDVP IHSEDNIAVK KESMPLQFLM
601: PLPVPKSPSD SWLSRSLPSV KNKPPPPSFL GIQVQSRKQA PWVSAHPKEN DLKPPRPRQI RFADVIHNFT LFCLCFCSSY FSEPLLTFYL PAYLGGGEAL
701: LFGY

Best Arabidopsis Sequence Match ( AT2G30990.2 )
(BLAST)

001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES

Arabidopsis Description

Protein of unknown function (DUF688) [Source:TAIR;Acc:AT2G30990]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.