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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os02t0643000-01
Os02t0810400-01
Os02t0810500-01
Os03t0319300-01
Os04t0534400-01
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os08t0156700-01
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G29240.1 Os02t0643000-01 AT3G60600.1 21798944
AT1G29240.1 Os04t0534400-01 AT3G60600.1 21798944
AT1G29240.1 Os08t0156700-01 AT3G60600.1 21798944
AT4G18630.1 Os01t0267900-01 AT5G21274.1 17360592
AT4G18630.1 Os01t0279300-01 AT5G21274.1 17360592
AT4G18630.1 Os01t0810300-01 AT5G21274.1 17360592
AT4G18630.1 Os03t0319300-01 AT5G21274.1 17360592
AT4G18630.1 Os05t0491000-01 AT5G21274.1 17360592
AT4G18630.1 Os05t0491100-01 AT5G21274.1 17360592
AT4G18630.1 Os07t0687200-02 AT5G21274.1 17360592
AT4G18630.1 Os12t0603800-00 AT5G21274.1 17360592
AT4G18630.1 Os02t0810400-01 AT5G43320.1 21798944
AT4G18630.1 Os02t0810500-01 AT5G43320.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3D01G295500.1 Wheat nucleus 62.46 62.92
TraesCS3B01G330200.2 Wheat cytosol, nucleus, plastid 61.73 59.05
TraesCS3A01G306400.2 Wheat nucleus 59.97 58.1
Zm00001d043395_P002 Maize nucleus 57.77 57.94
EES01501 Sorghum nucleus 57.33 56.83
GSMUA_Achr1P04800_001 Banana nucleus 24.34 31.86
GSMUA_Achr9P06400_001 Banana nucleus 30.35 31.13
Solyc07g055140.2.1 Tomato nucleus 15.69 30.4
GSMUA_Achr6P26820_001 Banana nucleus 28.01 29.12
KRH22276 Soybean nucleus 6.89 28.31
KRH74883 Soybean nucleus 12.02 26.45
VIT_12s0028g02110.t01 Wine grape nucleus 24.49 24.63
KRH04495 Soybean nucleus 11.14 24.36
Bra021994.1-P Field mustard nucleus 14.66 24.33
CDY43328 Canola nucleus 18.18 24.27
CDX90178 Canola nucleus 17.89 23.97
Bra010842.1-P Field mustard nucleus 18.33 23.95
CDY15640 Canola mitochondrion, nucleus, plastid 15.98 23.9
Bra030129.1-P Field mustard mitochondrion, nucleus, plastid 17.01 23.87
CDX94655 Canola mitochondrion 17.01 23.87
CDY06031 Canola nucleus 15.1 23.57
AT2G30990.4 Thale cress nucleus 20.38 23.44
AT1G29240.1 Thale cress nucleus 19.65 23.22
CDY52694 Canola nucleus 15.98 23.19
CDX99449 Canola nucleus 15.54 22.46
KRH58978 Soybean nucleus 21.99 22.42
PGSC0003DMT400052652 Potato nucleus 19.21 22.28
KRH11026 Soybean nucleus 21.99 22.16
AT4G18630.1 Thale cress nucleus 15.54 22.13
CDX78880 Canola nucleus 15.25 21.8
KRH42875 Soybean nucleus 21.55 21.78
KRH27055 Soybean nucleus 17.89 21.75
CDX87761 Canola nucleus 13.78 21.71
CDY58982 Canola nucleus 17.01 21.68
CDY10767 Canola nucleus 13.49 21.6
Bra013335.1-P Field mustard nucleus 14.96 21.47
CDY63140 Canola nucleus 15.4 21.47
AT2G34170.3 Thale cress nucleus 16.42 21.41
CDY53997 Canola plastid 13.2 21.38
Bra021686.1-P Field mustard nucleus 16.72 21.31
CDY17227 Canola nucleus 15.1 21.02
CDY01559 Canola nucleus, plastid 13.64 20.85
PGSC0003DMT400026504 Potato nucleus 20.97 20.61
Bra012583.1-P Field mustard plastid 13.64 20.58
PGSC0003DMT400039770 Potato cytosol 17.16 20.42
Solyc02g076680.2.1 Tomato nucleus 20.67 20.29
KRH55736 Soybean nucleus 20.38 20.23
CDX97772 Canola extracellular, vacuole 16.57 20.21
KRH25783 Soybean nucleus 20.82 20.08
KRH21261 Soybean cytosol, mitochondrion, plastid 11.58 19.95
Solyc12g013960.1.1 Tomato nucleus 17.89 19.87
Bra005448.1-P Field mustard nucleus 14.96 19.35
Bra018284.1-P Field mustard nucleus 13.78 19.34
AT5G45850.1 Thale cress nucleus 12.61 19.33
VIT_10s0003g01370.t01 Wine grape plastid 21.26 18.31
Protein Annotations
EnsemblPlants:Os01t0758900-01EnsemblPlantsGene:Os01g0758900EntrezGene:4325608InterPro:DUF688PANTHER:PTHR33671PANTHER:PTHR33671:SF5
PFAM:PF05097ProteinID:BAD87594.1ProteinID:BAF06220.1ProteinID:BAS74435.1RefSeq:XP_015622712.1SEG:seg
UniParc:UPI00004C2A18UniProt:Q5JLR2MapMan:35.2:::
Description
Protein of unknown function DUF688 family protein. (Os01t0758900-01)
Coordinates
chr1:+:31919494..31922325
Molecular Weight (calculated)
73003.8 Da
IEP (calculated)
6.931
GRAVY (calculated)
-0.709
Length
682 amino acids
Sequence
(BLAST)
001: MRADRLMAEG GKRIDLGAPL RSVRHADALP YHKADLNSGP VRHPGAVPFV WEQRPGQPKS VRTRRAPPSP TTASHPQPLE HGVEDEIDGS PYHDALGEHY
101: VGILHGVDAS PACSRTGAPA PAPARDEKRA QVAEAAVLQA KKEVTEKQVV SVAAVLRKGD DDDDDEERFS DALDTLSRTE SFTVNCSVSG LSGMPEPTSR
201: AAAGAEAGVR GIMMDRFLPA AQAVAIGSPQ YTFRKAGAAS ATSNSGRELA RAAGSNASGS SGDDPGRRTP VQLPYQHLPP NYLSCSYPRR EEQEDEDDDD
301: DYDVHSTRGF ASKGCGLLPS LCVKGSLLLL NPMPAMKRGK PRGNGRVREF ASKGRGRGAP SPLARSSQNK HLGCASNGSW EDVYKHKLEQ KYVRPGEDGR
401: SKLTSESNQL TFWSDSQAGN GSSPFHHSAG GGMSPYYRDV VLSSSSKADE SFGTGVKEDK MSSSNGSSSL GRDHDRGSLL GSDRSSLKGS SSISSGLDRP
501: VHVESMDHRG DIDSETSHSV LLLDSRTSLD AGGCGSQLGE QIVGKNPIGK GEDNDPLTER VSEVTECTLL APSEKLRSVN LDDGKTSGHL EDSSVSKRDM
601: PLQSLLPLPV PRSPSESWLS RTLPSVTSKP PVPSFLGIQL QSKKQTPWAS IQPKENNVKP PRPRQIRFAD VVERPNSLDA EI
Best Arabidopsis Sequence Match ( AT1G29240.1 )
(BLAST)
001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
Arabidopsis Description
F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.