Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P06400_001 | Banana | nucleus | 55.64 | 54.89 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 31.1 | 39.16 |
| KRH22276 | Soybean | nucleus | 9.3 | 36.75 |
| Solyc07g055140.2.1 | Tomato | nucleus | 18.6 | 34.66 |
| KRH74883 | Soybean | nucleus | 15.7 | 33.23 |
| KRH04495 | Soybean | nucleus | 14.33 | 30.13 |
| PGSC0003DMT400052652 | Potato | nucleus | 25.76 | 28.74 |
| VIT_12s0028g02110.t01 | Wine grape | nucleus | 28.96 | 28.02 |
| Os01t0758900-01 | Rice | nucleus | 29.12 | 28.01 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 28.05 | 27.18 |
| CDY52694 | Canola | nucleus | 19.36 | 27.02 |
| Zm00001d043395_P002 | Maize | nucleus | 27.9 | 26.91 |
| EES01501 | Sorghum | nucleus | 28.2 | 26.89 |
| CDY10767 | Canola | nucleus | 17.38 | 26.76 |
| Bra021994.1-P | Field mustard | nucleus | 16.62 | 26.52 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 28.51 | 26.23 |
| KRH27055 | Soybean | nucleus | 22.26 | 26.02 |
| PGSC0003DMT400039770 | Potato | cytosol | 22.71 | 26.0 |
| CDY43328 | Canola | nucleus | 19.97 | 25.64 |
| Solyc12g013960.1.1 | Tomato | nucleus | 23.93 | 25.57 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 27.44 | 25.57 |
| CDY06031 | Canola | nucleus | 16.92 | 25.4 |
| CDX94655 | Canola | mitochondrion | 18.75 | 25.31 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 17.53 | 25.22 |
| KRH11026 | Soybean | nucleus | 25.91 | 25.11 |
| Bra030129.1-P | Field mustard | mitochondrion, nucleus, plastid | 18.6 | 25.1 |
| AT2G34170.3 | Thale cress | nucleus | 19.97 | 25.05 |
| CDY58982 | Canola | nucleus | 20.27 | 24.86 |
| Bra021686.1-P | Field mustard | nucleus | 20.27 | 24.86 |
| CDX90178 | Canola | nucleus | 19.21 | 24.75 |
| CDY63140 | Canola | nucleus | 18.45 | 24.74 |
| KRH25783 | Soybean | nucleus | 26.52 | 24.61 |
| KRH58978 | Soybean | nucleus | 25.0 | 24.51 |
| KRH55736 | Soybean | nucleus | 25.61 | 24.45 |
| KRH42875 | Soybean | nucleus | 25.0 | 24.3 |
| AT1G29240.1 | Thale cress | nucleus | 21.04 | 23.92 |
| CDY17227 | Canola | nucleus | 17.84 | 23.88 |
| Bra010842.1-P | Field mustard | nucleus | 18.9 | 23.75 |
| Bra018284.1-P | Field mustard | nucleus | 17.53 | 23.66 |
| AT2G30990.4 | Thale cress | nucleus | 21.34 | 23.61 |
| Solyc02g076680.2.1 | Tomato | nucleus | 25.0 | 23.6 |
| PGSC0003DMT400026504 | Potato | nucleus | 24.85 | 23.49 |
| CDX97772 | Canola | extracellular, vacuole | 19.97 | 23.43 |
| AT5G45850.1 | Thale cress | nucleus | 15.85 | 23.37 |
| CDX99449 | Canola | nucleus | 16.77 | 23.31 |
| CDX87761 | Canola | nucleus | 15.24 | 23.09 |
| CDX78880 | Canola | nucleus | 16.77 | 23.06 |
| AT4G18630.1 | Thale cress | nucleus | 16.62 | 22.76 |
| Bra013335.1-P | Field mustard | nucleus | 16.46 | 22.74 |
| CDY01559 | Canola | nucleus, plastid | 15.4 | 22.65 |
| Bra005448.1-P | Field mustard | nucleus | 17.84 | 22.2 |
| Bra012583.1-P | Field mustard | plastid | 15.24 | 22.12 |
| CDY53997 | Canola | plastid | 14.18 | 22.09 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 26.07 | 21.59 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 12.2 | 20.2 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P26820_001 | EnsemblPlants:GSMUA_Achr6T26820_001 | EnsemblPlantsGene:GSMUA_Achr6G26820_001 | InterPro:DUF688 | PANTHER:PTHR33671 | PFAM:PF05097 |
| SEG:seg | UniParc:UPI00029611EF | UniProt:M0TAH7 | MapMan:35.2 | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G26820_001]
Coordinates
chr6:-:27463997..27466342
Molecular Weight (calculated)
71394.0 Da
IEP (calculated)
5.310
GRAVY (calculated)
-0.825
Length
656 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDKRIDLDA PLLSVRRFSA GAASPAPSVS KEEEGDQRPP PPRRSSLPFY KSDLKSGPVR VPGVVPFVWE QTPGQPKEGS VPTSDGKPLP SPKPPPGKIM
101: KQKEPDLSRA AAAPAAKLGN SVRTRKAVAF ACDGGTAISP ESPVDAPKNV EVRKVQNKLI QESVPAANNL EEEGGGGDDD DDAFSDALDT LSRAESLLMN
201: CSVSGVSGMP DAAKLSGSVP KDPQVRDFMM ERFLPAAQAM VCESTQYTFR KAAGPPREAT KPVERVAIND RNRRPPAPMR YHNMPDYFPQ YAKELEEGDS
301: NDDDEDDEYS DDDAGHLPSK ACGLLSRFCL KNSFCLLNPV SGIKDRGRLP PPPRGRTRDP QLWNLHRLSL GPVEDENSWE TVYRHKLGQN SRPQVAEVSK
401: LRSESDSQTA DGSVTGGSSP YHNEGNGFLG NPRSKSSKTD DSDAGDKDIN RWETNHSSSR IGLGSMSPAL EKTLYIDLAN RPGSSDSKSS SFNTVKDTRG
501: MLSSGEVGTG SRRMEESFVA EACEVSEAAE PVLPFSSEKP NHMDMNGDDN HKHVDNDRDP LHLSDDDLNP LRSLLPPPLP KSPSESWLSR TLPSVRSKNP
601: APRSLLGVQP LPRKQTLQAS SADIKQETSV EPSEPLHRQI LFAEVLAKYE SPKSEN
101: KQKEPDLSRA AAAPAAKLGN SVRTRKAVAF ACDGGTAISP ESPVDAPKNV EVRKVQNKLI QESVPAANNL EEEGGGGDDD DDAFSDALDT LSRAESLLMN
201: CSVSGVSGMP DAAKLSGSVP KDPQVRDFMM ERFLPAAQAM VCESTQYTFR KAAGPPREAT KPVERVAIND RNRRPPAPMR YHNMPDYFPQ YAKELEEGDS
301: NDDDEDDEYS DDDAGHLPSK ACGLLSRFCL KNSFCLLNPV SGIKDRGRLP PPPRGRTRDP QLWNLHRLSL GPVEDENSWE TVYRHKLGQN SRPQVAEVSK
401: LRSESDSQTA DGSVTGGSSP YHNEGNGFLG NPRSKSSKTD DSDAGDKDIN RWETNHSSSR IGLGSMSPAL EKTLYIDLAN RPGSSDSKSS SFNTVKDTRG
501: MLSSGEVGTG SRRMEESFVA EACEVSEAAE PVLPFSSEKP NHMDMNGDDN HKHVDNDRDP LHLSDDDLNP LRSLLPPPLP KSPSESWLSR TLPSVRSKNP
601: APRSLLGVQP LPRKQTLQAS SADIKQETSV EPSEPLHRQI LFAEVLAKYE SPKSEN
001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
Arabidopsis Description
Protein of unknown function (DUF688) [Source:TAIR;Acc:AT2G30990]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.