Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH11026 | Soybean | nucleus | 81.57 | 47.71 |
| KRH42875 | Soybean | nucleus | 51.52 | 30.22 |
| KRH58978 | Soybean | nucleus | 51.01 | 30.19 |
| CDY63140 | Canola | nucleus | 23.23 | 18.81 |
| CDY17227 | Canola | nucleus | 22.98 | 18.57 |
| AT2G34170.3 | Thale cress | nucleus | 23.23 | 17.59 |
| CDX90178 | Canola | nucleus | 22.47 | 17.49 |
| CDY43328 | Canola | nucleus | 22.22 | 17.22 |
| Bra005448.1-P | Field mustard | nucleus | 22.22 | 16.7 |
| Bra030129.1-P | Field mustard | mitochondrion, nucleus, plastid | 20.45 | 16.67 |
| Bra010842.1-P | Field mustard | nucleus | 21.46 | 16.28 |
| PGSC0003DMT400026504 | Potato | nucleus | 28.03 | 15.99 |
| AT1G29240.1 | Thale cress | nucleus | 23.23 | 15.94 |
| CDX94655 | Canola | mitochondrion | 19.44 | 15.84 |
| Solyc02g076680.2.1 | Tomato | nucleus | 27.78 | 15.83 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 17.42 | 15.13 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 28.79 | 14.39 |
| CDX99449 | Canola | nucleus | 15.66 | 13.14 |
| Bra013335.1-P | Field mustard | nucleus | 15.66 | 13.05 |
| CDX78880 | Canola | nucleus | 15.66 | 13.0 |
| Bra021994.1-P | Field mustard | nucleus | 13.13 | 12.65 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 20.96 | 12.48 |
| CDX87761 | Canola | nucleus | 13.38 | 12.24 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 20.2 | 12.2 |
| AT4G18630.1 | Thale cress | nucleus | 14.65 | 12.11 |
| AT5G45850.1 | Thale cress | nucleus | 13.38 | 11.91 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 15.66 | 11.9 |
| Bra012583.1-P | Field mustard | plastid | 13.38 | 11.73 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 19.95 | 11.67 |
| CDY01559 | Canola | nucleus, plastid | 13.13 | 11.66 |
| Zm00001d043395_P002 | Maize | nucleus | 19.95 | 11.62 |
| Os01t0758900-01 | Rice | nucleus | 19.95 | 11.58 |
| EES01501 | Sorghum | nucleus | 19.7 | 11.34 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 19.95 | 11.22 |
| CDY06031 | Canola | nucleus | 12.37 | 11.21 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 19.95 | 11.08 |
| KRH25783 | Soybean | nucleus | 19.44 | 10.89 |
| KRH55736 | Soybean | nucleus | 18.43 | 10.63 |
| KRH27055 | Soybean | nucleus | 13.89 | 9.8 |
| CDY53997 | Canola | plastid | 9.34 | 8.79 |
| KRH04495 | Soybean | nucleus | 3.79 | 4.81 |
| KRH74883 | Soybean | nucleus | 2.78 | 3.55 |
| KRH22276 | Soybean | nucleus | 0.0 | 0.0 |
Protein Annotations
| EMBL:ACUP02008350 | EnsemblPlants:KRH21261 | EnsemblPlantsGene:GLYMA_13G229000 | InterPro:DUF688 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF3 |
| PFAM:PF05097 | ProteinID:KRH21259.1 | ProteinID:KRH21260.1 | ProteinID:KRH21261 | ProteinID:KRH21261.1 | ProteinID:KRH21262.1 |
| ProteinID:KRH21263.1 | SEG:seg | UniParc:UPI0002957615 | UniProt:K7M1B8 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr13:-:34121142..34125818
Molecular Weight (calculated)
43084.9 Da
IEP (calculated)
10.493
GRAVY (calculated)
-0.584
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: GCGLLPQLHI RNSLCLLNPV AAMKMKNKAI LPPASEVVKP NKSSHIRSFS PVPAVKKAWE AIHKSKSSSR AASPDKQEGK KKWTSESNRF TYSGELLPGR
101: LSPFRRSRAA AAGISPCRSK PQSPFRGAKL PGDTKEAENY MFGKVKFHSG VLGNVHDVLS QGAKRTSYSG NLTIEKTLYV DTASTAKLSS SNISSLDINQ
201: RVDTVVADLD RSRGKGSNSS FGSSQVIKQV HAVEEKVTFD TDVLSSLDSI PPSLYSYLNL AAKENKDLGL TTDQNISQKP VSLQSVQGTF AEDSKTNTQQ
301: IVLANDSGKG SAESIVSSLP PPLPKSPSES WLWRALPLVS VKNSFLHSSQ GTQSKAKRHD SNTSGNLKWE TIVKTSNLHH DHVRYSQELP TRKSQH
101: LSPFRRSRAA AAGISPCRSK PQSPFRGAKL PGDTKEAENY MFGKVKFHSG VLGNVHDVLS QGAKRTSYSG NLTIEKTLYV DTASTAKLSS SNISSLDINQ
201: RVDTVVADLD RSRGKGSNSS FGSSQVIKQV HAVEEKVTFD TDVLSSLDSI PPSLYSYLNL AAKENKDLGL TTDQNISQKP VSLQSVQGTF AEDSKTNTQQ
301: IVLANDSGKG SAESIVSSLP PPLPKSPSES WLWRALPLVS VKNSFLHSSQ GTQSKAKRHD SNTSGNLKWE TIVKTSNLHH DHVRYSQELP TRKSQH
001: MEEKKLNLDA PFLSVRRVPT KPDDPNESEN TKKKTMTTRR REIKDSCQET ENEILIRLLQ DQSFEHVMEP SSVPFKWEQT PGKPKDKKNL VEESDLIKAM
101: EMVSSTASFS VNCSSSGVSE FENNGDGDRS SNVSRDDVIL EYRDLIMSRF LPAAEAISLK MKKEASRVKA EKKKKQSIAL QRVSMAINQD LNNDVDDEEH
201: CDHNHVDGID ALVYSNDSKK GQLGFLPWFC SKNSVDVLTP VLSRIKTCQD VGVKSENIIN PKSIDSVYKT KSTSPRIFKS SKVMSKSQEI DATPRFSNDI
301: SRISLPKSRE TLQIPRNHSR LQQTTDQNQR QEIRFLVEEV KRRSNRNKNR SENLSVSQPP LPKTPSESWL CRTLPRSSTT SSVVSGQFAV VVSGQAARFK
401: KNMEKKTDSQ SKKWETIVKT SYSHHDHVRY SEGLIVVHPT RQHKF
101: EMVSSTASFS VNCSSSGVSE FENNGDGDRS SNVSRDDVIL EYRDLIMSRF LPAAEAISLK MKKEASRVKA EKKKKQSIAL QRVSMAINQD LNNDVDDEEH
201: CDHNHVDGID ALVYSNDSKK GQLGFLPWFC SKNSVDVLTP VLSRIKTCQD VGVKSENIIN PKSIDSVYKT KSTSPRIFKS SKVMSKSQEI DATPRFSNDI
301: SRISLPKSRE TLQIPRNHSR LQQTTDQNQR QEIRFLVEEV KRRSNRNKNR SENLSVSQPP LPKTPSESWL CRTLPRSSTT SSVVSGQFAV VVSGQAARFK
401: KNMEKKTDSQ SKKWETIVKT SYSHHDHVRY SEGLIVVHPT RQHKF
Arabidopsis Description
Protein of unknown function (DUF688) [Source:TAIR;Acc:AT5G45850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.