Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87761 | Canola | nucleus | 83.3 | 84.06 |
| AT5G45850.1 | Thale cress | nucleus | 54.46 | 53.48 |
| CDY01559 | Canola | nucleus, plastid | 33.87 | 33.18 |
| CDX78880 | Canola | nucleus | 34.32 | 31.45 |
| CDX99449 | Canola | nucleus | 32.95 | 30.51 |
| CDY53997 | Canola | plastid | 28.6 | 29.69 |
| CDY10767 | Canola | nucleus | 21.28 | 21.83 |
| CDX94655 | Canola | mitochondrion | 24.03 | 21.6 |
| CDX90178 | Canola | nucleus | 24.94 | 21.41 |
| CDY43328 | Canola | nucleus | 24.71 | 21.14 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 21.97 | 21.05 |
| CDY52694 | Canola | nucleus | 22.2 | 20.64 |
| CDY63140 | Canola | nucleus | 22.43 | 20.04 |
| CDY17227 | Canola | nucleus | 21.51 | 19.18 |
| CDY58982 | Canola | nucleus | 22.88 | 18.69 |
| CDX97772 | Canola | extracellular, vacuole | 22.43 | 17.53 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 25.4 | 16.92 |
| KRH11026 | Soybean | nucleus | 26.09 | 16.84 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 19.68 | 16.51 |
| KRH42875 | Soybean | nucleus | 25.4 | 16.44 |
| KRH58978 | Soybean | nucleus | 24.71 | 16.14 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 24.49 | 16.09 |
| PGSC0003DMT400026504 | Potato | nucleus | 25.4 | 15.99 |
| Solyc02g076680.2.1 | Tomato | nucleus | 25.4 | 15.97 |
| Os01t0758900-01 | Rice | nucleus | 23.57 | 15.1 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 23.34 | 15.07 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 27.23 | 15.03 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 23.57 | 14.63 |
| Zm00001d043395_P002 | Maize | nucleus | 22.43 | 14.41 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 23.11 | 14.17 |
| EES01501 | Sorghum | nucleus | 22.2 | 14.1 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 11.21 | 12.37 |
Protein Annotations
| EnsemblPlants:CDY06031 | EnsemblPlantsGene:GSBRNA2T00121882001 | InterPro:DUF688 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF3 | PFAM:PF05097 |
| ProteinID:CDY06031 | ProteinID:CDY06031.1 | SEG:seg | UniParc:UPI0004EDAFF3 | MapMan:35.2 | : |
Description
BnaA09g37490D
Coordinates
chrLK031967:+:393512..394909
Molecular Weight (calculated)
49425.3 Da
IEP (calculated)
10.568
GRAVY (calculated)
-0.719
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQRSVKIFL SEETMEEKKP NLDAPSLSVR RIPTKLENPS DSENTKKITT TIRRRKVKDS CQETEHGTVV RLLQDDKSFD HVVEPSLVPF VWEQTPGKPK
101: DHHTLLQESD LIKALDMVSS TASFSVNCST NGVSDEFENN GGRPSSVSKD DVNLKYRDLI MARFLPAAKA IALKQKKGSF RDQEEKMMKK KKKKRIIALQ
201: RVSMAINQDL NNDGHDHVEE AVHSSDPKKA MFGFLPQLCS KNSLDVLNPV LFRIKTCQNV AVSSSKIINP ITQYSVYKTK PASSTIIVRS NKAMSKSQET
301: SPIPRFSEKL STTSRLQRTS STQIKRQDTK FLSEGVKRMR NRNKNRSGNI SVSQPPLPKT PSESWLCRTL PRSSTVSTVV PGQLPVLLSG QDTGLRKMMD
401: QKSIKWETIV KTSYKHHDNV RYSEELTVVH PSRQHKP
101: DHHTLLQESD LIKALDMVSS TASFSVNCST NGVSDEFENN GGRPSSVSKD DVNLKYRDLI MARFLPAAKA IALKQKKGSF RDQEEKMMKK KKKKRIIALQ
201: RVSMAINQDL NNDGHDHVEE AVHSSDPKKA MFGFLPQLCS KNSLDVLNPV LFRIKTCQNV AVSSSKIINP ITQYSVYKTK PASSTIIVRS NKAMSKSQET
301: SPIPRFSEKL STTSRLQRTS STQIKRQDTK FLSEGVKRMR NRNKNRSGNI SVSQPPLPKT PSESWLCRTL PRSSTVSTVV PGQLPVLLSG QDTGLRKMMD
401: QKSIKWETIV KTSYKHHDNV RYSEELTVVH PSRQHKP
001: MEEKKLNLDA PFLSVRRVPT KPDDPNESEN TKKKTMTTRR REIKDSCQET ENEILIRLLQ DQSFEHVMEP SSVPFKWEQT PGKPKDKKNL VEESDLIKAM
101: EMVSSTASFS VNCSSSGVSE FENNGDGDRS SNVSRDDVIL EYRDLIMSRF LPAAEAISLK MKKEASRVKA EKKKKQSIAL QRVSMAINQD LNNDVDDEEH
201: CDHNHVDGID ALVYSNDSKK GQLGFLPWFC SKNSVDVLTP VLSRIKTCQD VGVKSENIIN PKSIDSVYKT KSTSPRIFKS SKVMSKSQEI DATPRFSNDI
301: SRISLPKSRE TLQIPRNHSR LQQTTDQNQR QEIRFLVEEV KRRSNRNKNR SENLSVSQPP LPKTPSESWL CRTLPRSSTT SSVVSGQFAV VVSGQAARFK
401: KNMEKKTDSQ SKKWETIVKT SYSHHDHVRY SEGLIVVHPT RQHKF
101: EMVSSTASFS VNCSSSGVSE FENNGDGDRS SNVSRDDVIL EYRDLIMSRF LPAAEAISLK MKKEASRVKA EKKKKQSIAL QRVSMAINQD LNNDVDDEEH
201: CDHNHVDGID ALVYSNDSKK GQLGFLPWFC SKNSVDVLTP VLSRIKTCQD VGVKSENIIN PKSIDSVYKT KSTSPRIFKS SKVMSKSQEI DATPRFSNDI
301: SRISLPKSRE TLQIPRNHSR LQQTTDQNQR QEIRFLVEEV KRRSNRNKNR SENLSVSQPP LPKTPSESWL CRTLPRSSTT SSVVSGQFAV VVSGQAARFK
401: KNMEKKTDSQ SKKWETIVKT SYSHHDHVRY SEGLIVVHPT RQHKF
Arabidopsis Description
Protein of unknown function (DUF688) [Source:TAIR;Acc:AT5G45850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.