CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH16959
KRH18664
KRH53667
KRH64261
KRH65384
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29240.1	KRH65384	AT3G60600.1	21798944
AT1G29240.1	KRH76164	AT3G60600.1	21798944
AT4G18630.1	KRH16959	AT3G49580.1	21798944
AT4G18630.1	KRH53667	AT3G49580.1	21798944
AT4G18630.1	KRH64261	AT3G49580.1	21798944
AT4G18630.1	KRG89812	AT5G21274.1	17360592
AT4G18630.1	KRG94975	AT5G21274.1	17360592
AT4G18630.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58978	Soybean	nucleus	89.93	90.73
KRH11026	Soybean	nucleus	55.85	55.69
KRH21261	Soybean	cytosol, mitochondrion, plastid	30.22	51.52
CDX90178	Canola	nucleus	24.74	32.81
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	23.26	32.3
CDY43328	Canola	nucleus	24.44	32.29
CDY15640	Canola	mitochondrion, nucleus, plastid	21.63	32.02
KRH74883	Soybean	nucleus	14.67	31.94
CDX94655	Canola	mitochondrion	22.96	31.89
Bra010842.1-P	Field mustard	nucleus	24.44	31.61
AT1G29240.1	Thale cress	nucleus	25.78	30.16
KRH22276	Soybean	nucleus	7.41	30.12
Solyc02g076680.2.1	Tomato	nucleus	30.81	29.93
AT2G34170.3	Thale cress	nucleus	23.11	29.83
PGSC0003DMT400026504	Potato	nucleus	30.67	29.83
CDY63140	Canola	nucleus	21.48	29.65
KRH04495	Soybean	nucleus	13.33	28.85
CDY17227	Canola	nucleus	20.89	28.78
VIT_10s0003g01370.t01	Wine grape	plastid	33.19	28.28
GSMUA_Achr1P04800_001	Banana	nucleus	21.33	27.64
AT5G45850.1	Thale cress	nucleus	17.93	27.19
CDX78880	Canola	nucleus	19.11	27.04
Bra013335.1-P	Field mustard	nucleus	18.96	26.95
CDX99449	Canola	nucleus	18.81	26.91
Bra005448.1-P	Field mustard	nucleus	20.89	26.76
KRH27055	Soybean	nucleus	21.78	26.2
Bra021994.1-P	Field mustard	nucleus	15.85	26.03
KRH55736	Soybean	nucleus	26.37	25.91
KRH25783	Soybean	nucleus	26.96	25.74
CDY06031	Canola	nucleus	16.44	25.4
AT4G18630.1	Thale cress	nucleus	17.93	25.26
GSMUA_Achr9P06400_001	Banana	nucleus	24.74	25.11
CDY01559	Canola	nucleus, plastid	16.59	25.11
Bra012583.1-P	Field mustard	plastid	16.74	25.0
GSMUA_Achr6P26820_001	Banana	nucleus	24.3	25.0
CDX87761	Canola	nucleus	15.56	24.25
CDY53997	Canola	plastid	14.96	23.99
Os01t0758900-01	Rice	nucleus	21.78	21.55
Zm00001d043395_P002	Maize	nucleus	21.04	20.88
TraesCS3D01G295500.1	Wheat	nucleus	20.89	20.83
EES01501	Sorghum	nucleus	21.19	20.78
TraesCS3A01G306400.2	Wheat	nucleus	21.48	20.6
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	20.89	19.78

Protein Annotations

EMBL:ACUP02004838	EnsemblPlants:KRH42875	EnsemblPlantsGene:GLYMA_08G116800	EntrezGene:102660500	InterPro:DUF688	PANTHER:PTHR33671
PANTHER:PTHR33671:SF3	PFAM:PF05097	ProteinID:KRH42875	ProteinID:KRH42875.1	ProteinID:KRH42876.1	ProteinID:KRH42877.1
SEG:seg	UniParc:UPI00023C5C7D	UniProt:K7L648	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr8:-:9005561..9009524

Molecular Weight (calculated)

75012.6 Da

IEP (calculated)

6.982

GRAVY (calculated)

-0.781

Length

675 amino acids

Sequence
(BLAST)

001: MMDERKLNID APLMSVRRSF GISPSLTEAN KKILEKPQTL PHYKSDTALD QVTEPVAVPF NWEHIPGRPK DYDGSEPQPP TQASITPTAP TLPPGKSTNV
101: AKQSLEKEPN VANNFRPSSI SNSLREKIDC DKEHKDEKIN KVEENDDYDD DSDIYSDALE TLSPTEPMSM NCSLSGVSGL DNVDENRCGT SSTDKQAHDF
201: MMSRFLNAAK AMTIQPPQYA SFRKQQPVLA EQPREFIKLV PEQKKSFVNR HITDIVPYTG QCQEEEEEEE ESDDETNDYA NNSAKGCGLF PRLCVRNSLC
301: LLNPVPGTKM GNQFPLYSAY EVVKPDKSSH IRSHRPAPAI KKAWDAINKS KLSSSSRAAS PDKKDVRKKW TSESSRYNYS GELKQLGRLS PFRRSRAASA
401: GVSPFRSKPQ PPFPGAKLLG DSEQADNNHS GKLKFPNRGH ASIQEVLSQG AKKSYSFGSL SVEKTLYIDT ASTVKSSCSS SRSLGSTIVV GKDRNSLVDS
501: FRDMKHLEAL EENLDSQVLN SVDANSPTLS SMLHLMAKED KAERLAADQE INQESMSLQL VPSSFDKDAE INNQQIVVVD DSGKVDNEYV LHPLAPPLPK
601: SPSESWLCRA LPLVSSKNSF PHSNQGTHSQ AKRQGFSRAS NFTKWETIVK SSNLNHDHVT YSKELVVYKS QHMKS

Best Arabidopsis Sequence Match ( AT1G29240.1 )
(BLAST)

001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT

Arabidopsis Description

F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.