CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH16959
KRH18664
KRH53667
KRH64261
KRH65384
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29240.1	KRH65384	AT3G60600.1	21798944
AT1G29240.1	KRH76164	AT3G60600.1	21798944
AT4G18630.1	KRH16959	AT3G49580.1	21798944
AT4G18630.1	KRH53667	AT3G49580.1	21798944
AT4G18630.1	KRH64261	AT3G49580.1	21798944
AT4G18630.1	KRG89812	AT5G21274.1	17360592
AT4G18630.1	KRG94975	AT5G21274.1	17360592
AT4G18630.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42875	Soybean	nucleus	90.73	89.93
KRH11026	Soybean	nucleus	55.75	55.1
KRH21261	Soybean	cytosol, mitochondrion, plastid	30.19	51.01
CDX90178	Canola	nucleus	25.56	33.6
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	24.07	33.13
CDY43328	Canola	nucleus	25.26	33.07
CDY15640	Canola	mitochondrion, nucleus, plastid	22.42	32.89
CDX94655	Canola	mitochondrion	23.77	32.72
Bra010842.1-P	Field mustard	nucleus	25.26	32.38
KRH74883	Soybean	nucleus	14.95	32.26
AT1G29240.1	Thale cress	nucleus	26.31	30.5
CDY63140	Canola	nucleus	21.97	30.06
KRH22276	Soybean	nucleus	7.32	29.52
KRH04495	Soybean	nucleus	13.75	29.49
Solyc02g076680.2.1	Tomato	nucleus	30.34	29.21
CDY17227	Canola	nucleus	21.38	29.18
AT2G34170.3	Thale cress	nucleus	22.72	29.06
PGSC0003DMT400026504	Potato	nucleus	30.04	28.96
VIT_10s0003g01370.t01	Wine grape	plastid	33.03	27.9
GSMUA_Achr1P04800_001	Banana	nucleus	21.38	27.45
Bra005448.1-P	Field mustard	nucleus	21.38	27.13
KRH27055	Soybean	nucleus	22.42	26.74
CDX99449	Canola	nucleus	18.83	26.69
CDX78880	Canola	nucleus	18.98	26.62
AT5G45850.1	Thale cress	nucleus	17.64	26.52
Bra013335.1-P	Field mustard	nucleus	18.68	26.32
KRH55736	Soybean	nucleus	26.61	25.91
Bra021994.1-P	Field mustard	nucleus	15.84	25.79
KRH25783	Soybean	nucleus	27.2	25.74
CDY01559	Canola	nucleus, plastid	16.89	25.34
GSMUA_Achr9P06400_001	Banana	nucleus	25.11	25.26
Bra012583.1-P	Field mustard	plastid	17.04	25.22
GSMUA_Achr6P26820_001	Banana	nucleus	24.51	25.0
AT4G18630.1	Thale cress	nucleus	17.79	24.84
CDY06031	Canola	nucleus	16.14	24.71
CDY53997	Canola	plastid	15.4	24.47
CDX87761	Canola	nucleus	15.4	23.79
Os01t0758900-01	Rice	nucleus	22.42	21.99
Zm00001d043395_P002	Maize	nucleus	21.67	21.32
TraesCS3D01G295500.1	Wheat	nucleus	21.52	21.27
EES01501	Sorghum	nucleus	21.67	21.08
TraesCS3A01G306400.2	Wheat	nucleus	21.82	20.74
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	21.52	20.2

Protein Annotations

EMBL:ACUP02003296	EnsemblPlants:KRH58978	EnsemblPlantsGene:GLYMA_05G159000	EntrezGene:102665249	InterPro:DUF688	ncoils:Coil
PANTHER:PTHR33671	PANTHER:PTHR33671:SF3	PFAM:PF05097	ProteinID:KRH58978	ProteinID:KRH58978.1	ProteinID:KRH58979.1
ProteinID:KRH58980.1	ProteinID:KRH58981.1	SEG:seg	UniParc:UPI0002962428	UniProt:K7KQI1	MapMan:35.2

Description

hypothetical protein

Coordinates

chr5:-:35116919..35119345

Molecular Weight (calculated)

74132.9 Da

IEP (calculated)

7.582

GRAVY (calculated)

-0.726

Length

669 amino acids

Sequence
(BLAST)

001: MMNERKLNID APLMSVRRSF GTSPSLTEAN RKILEKPQTL PNYKSDTTLD QVTEPVAVPF NWEHIPGRSK DYDGSEPQLP TKASITPILP PGKSTNVAKQ
101: SLEKEPNVAN NFRPPSISNS LSEKIDCNKE HKDEKMKKVE ENDDYDDDGD VYSDALETLS PTEPLSMNCS VSDVSGLDNV VADMCGASST DKQAHDFMMS
201: RFLTAAKAMT IQPPQYASSR KQTVLTEQPR EFIKLVPEQK KSFVSRHITD IVPYTGQCQE EEEEEEESDN ETNDYANNSA KGCGLFPRLC VRNSLCLLNP
301: VPGTKMGNQF PLYSAYEVGK PDKSSHIRSH RPAPSIKKAW DAINKSKSSS RAASPDKQDV RKKWTSESSR YTYSGELKKL GRLSPFRRSR AASAGVSPFQ
401: SKPQPPFPGA KLLGDSKQDD NNHSGKLKFP SRGHSSIQEV LSQGAKRSYS FGSLTVEKTL YIDTASTIKS SCSSSHSLGN TIVVGKDRTF LLDSFRDMKH
501: LEALEENLDS QVLNPVDANS PTLSSMLHLM AKEDKAERLA ADQEINLESM SLQLVPSSFD KDAEISKQQI VVVDDSGKVG NEYVLHPLAP PLPKSPSESW
601: LCRALPLVSS KNSFPLSNQG THSQAKRQGF SRASSYTKWE TIVKSSNLNH DHVTCSKELV VYKSQHMKS

Best Arabidopsis Sequence Match ( AT1G29240.1 )
(BLAST)

001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT

Arabidopsis Description

F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.