Factsheet for Bra030129.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003423.1-P
Bra007547.1-P
Bra014481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29240.1	Bra003423.1-P	AT3G60600.1	21798944
AT1G29240.1	Bra007547.1-P	AT3G60600.1	21798944
AT1G29240.1	Bra014481.1-P	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15640	Canola	mitochondrion, nucleus, plastid	92.8	98.9
Bra010842.1-P	Field mustard	nucleus	67.28	62.64
AT1G29240.1	Thale cress	nucleus	59.88	50.43
Bra005448.1-P	Field mustard	nucleus	44.65	41.18
Bra013335.1-P	Field mustard	nucleus	25.31	25.89
Bra021994.1-P	Field mustard	nucleus	21.6	25.55
Bra012583.1-P	Field mustard	plastid	23.05	24.78
KRH58978	Soybean	nucleus	33.13	24.07
KRH11026	Soybean	nucleus	32.72	23.49
KRH42875	Soybean	nucleus	32.3	23.26
PGSC0003DMT400026504	Potato	nucleus	30.45	21.33
Solyc02g076680.2.1	Tomato	nucleus	30.45	21.3
VIT_10s0003g01370.t01	Wine grape	plastid	33.33	20.45
KRH21261	Soybean	cytosol, mitochondrion, plastid	16.67	20.45
Bra021686.1-P	Field mustard	nucleus	22.22	20.19
GSMUA_Achr1P04800_001	Banana	nucleus	21.4	19.96
GSMUA_Achr9P06400_001	Banana	nucleus	25.72	18.8
GSMUA_Achr6P26820_001	Banana	nucleus	25.1	18.6
TraesCS3D01G295500.1	Wheat	nucleus	24.49	17.58
Zm00001d043395_P002	Maize	nucleus	24.07	17.21
Os01t0758900-01	Rice	nucleus	23.87	17.01
TraesCS3A01G306400.2	Wheat	nucleus	24.49	16.9
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	24.69	16.83
EES01501	Sorghum	nucleus	23.66	16.72
Bra018284.1-P	Field mustard	nucleus	16.46	16.46

Protein Annotations

EnsemblPlants:Bra030129.1	EnsemblPlants:Bra030129.1-P	EnsemblPlantsGene:Bra030129	InterPro:DUF688	PANTHER:PTHR33671	PANTHER:PTHR33671:SF3
PFAM:PF05097	SEG:seg	UniParc:UPI000254109A	UniProt:M4EMV9	MapMan:35.2	:

Description

AT1G29240 (E=4e-105) | unknown protein

Coordinates

chrA07:-:6344261..6345887

Molecular Weight (calculated)

54990.3 Da

IEP (calculated)

8.645

GRAVY (calculated)

-0.838

Length

486 amino acids

Sequence
(BLAST)

001: MAERRLNFKA PLLSTRRMHN TAVSVRRNKS NNNFTLDSTT SEMGLDQVTE VASVPFTWKQ SPGRLKGHDS SPQKVCDQVV TPCLPPGNLS FRAKQVEEDS
101: EDVFSDAHDT HSYFSPNHSI TGVSGYSVVE TKNLSEDPQS RDFMLNRFLP AAKAMTVEQP HYGSNRKPSS FMSEPTIQIR DSVPEEKRKT PNRYDKSTLS
201: PYYDHHQDID NEESVEEEDD EVSEYAYLSR RGCGMFPQLC FKESVAMLNT GFKSKQNSPS HDQVKSSKVS QLKSRFQSIK QLALDSVSKH KLGGKVLSPV
301: HPNLTSSASM SSSPYRHTKC MSPFRNGSPF HRDTRKETES LRANRLNKHI SNISNASASS LLEKTVYVDT EDSPKTNIMI FPEEVEKKPD TNLELEELGK
401: INSSPGRSLL APPLPKKPSE SWLLHNLPSV VNSQTSSRRY TFHPKKESFN ENSISVTKWE TIVKTSYMHR DHIRYSEELV AHTSLQ

Best Arabidopsis Sequence Match ( AT1G29240.1 )
(BLAST)

001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT

Arabidopsis Description

F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.