Factsheet for VIT_10s0003g01370.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plasma membrane 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
golgi 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_15s0048g00220.t01
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29240.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT4G18630.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT4G18630.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT4G18630.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026504	Potato	nucleus	33.71	38.47
Solyc02g076680.2.1	Tomato	nucleus	33.46	38.13
VIT_12s0028g02110.t01	Wine grape	nucleus	30.68	35.84
CDY15640	Canola	mitochondrion, nucleus, plastid	19.44	33.77
KRH11026	Soybean	nucleus	28.54	33.38
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	20.45	33.33
KRH42875	Soybean	nucleus	28.28	33.19
KRH58978	Soybean	nucleus	27.9	33.03
CDX94655	Canola	mitochondrion	20.08	32.72
CDY43328	Canola	nucleus	20.83	32.29
AT1G29240.1	Thale cress	nucleus	23.23	31.89
CDX90178	Canola	nucleus	20.45	31.83
CDY17227	Canola	nucleus	19.57	31.63
Bra010842.1-P	Field mustard	nucleus	20.45	31.03
AT2G34170.3	Thale cress	nucleus	20.08	30.4
CDY63140	Canola	nucleus	18.56	30.06
Bra021994.1-P	Field mustard	nucleus	15.28	29.44
Bra005448.1-P	Field mustard	nucleus	19.57	29.41
GSMUA_Achr1P04800_001	Banana	nucleus	18.94	28.79
KRH21261	Soybean	cytosol, mitochondrion, plastid	14.39	28.79
AT5G45850.1	Thale cress	nucleus	15.91	28.31
CDY06031	Canola	nucleus	15.03	27.23
GSMUA_Achr9P06400_001	Banana	nucleus	22.6	26.92
CDX99449	Canola	nucleus	15.91	26.69
CDX87761	Canola	nucleus	14.52	26.56
GSMUA_Achr6P26820_001	Banana	nucleus	21.59	26.07
Bra013335.1-P	Field mustard	nucleus	15.4	25.68
CDX78880	Canola	nucleus	15.4	25.58
AT4G18630.1	Thale cress	nucleus	15.4	25.47
Bra012583.1-P	Field mustard	plastid	14.39	25.22
CDY01559	Canola	nucleus, plastid	14.02	24.89
CDY53997	Canola	plastid	12.12	22.8
TraesCS3D01G295500.1	Wheat	nucleus	18.43	21.57
Os01t0758900-01	Rice	nucleus	18.31	21.26
TraesCS3A01G306400.2	Wheat	nucleus	18.69	21.02
Zm00001d043395_P002	Maize	nucleus	17.93	20.88
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	18.31	20.34
EES01501	Sorghum	nucleus	17.05	19.62

Protein Annotations

EntrezGene:100253264	wikigene:100253264	MapMan:35.2	ProteinID:CBI30693	ProteinID:CBI30693.3	UniProt:D7TJM1
InterPro:DUF688	EMBL:FN595992	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100253264
wikigene:LOC100253264	PFAM:PF05097	PANTHER:PTHR33671	PANTHER:PTHR33671:SF3	TMHMM:TMhelix	UniParc:UPI0001BE37ED
ArrayExpress:VIT_10s0003g01370	EnsemblPlantsGene:VIT_10s0003g01370	EnsemblPlants:VIT_10s0003g01370.t01	unigene:Vvi.3385	RefSeq:XP_002266263	RefSeq:XP_002266263.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:2720041..2723488

Molecular Weight (calculated)

88751.6 Da

IEP (calculated)

5.898

GRAVY (calculated)

-0.649

Length

792 amino acids

Sequence
(BLAST)

001: MAKSLISVSL VSSLHENDCE SKSICRERNW SENFLAFSLF FLLFVSLLLK FRQDPRRHRS VLHLHSRTTL NNCMQNVTGQ VFLEFRFCAS ELNSAKSNTT
101: DSVFANKARR SAENQLYREF MEGKQLNFSA PLLSVRRISS TLGSSDGQKK KMIENPRPYR QISIPSYIPY SSVDQVTEPV AVPFRWEQIP GRAKDGSEPE
201: PQLHDEELSS TPRVPPGRVF DVIQKPAEIE SDNRNIFRPQ NETSSLDENF TNLEGLHEEG DSDNDSGSDA YSDAVDSLSP TNSLSLSCSV SGLSGSDGPD
301: VKPSGTFSID PQTRDLMMNR FLPAAKAMVL ETPHYASRKQ SVVLEQPRQV KRVISEDTKP SLNKYSTDII PYYGQYEEEE GRESEDEHDE YDASGNIPGC
401: GLIPRFCLKN SLCLLDPVPG MKVRTRVPKS SARVVKKLSK HAYVRDHDRI VTKNAWDAFR RNQLDYEVQS SKLHEVGNMM TVESNCTYSS DSQATDGSSP
501: HRHSSSGGGI SPYRNEAPHS PFHEGMGFLG VPIEVDNFKA DRLIFYSQAC KNFSEILSPE ENKQGPGSVS PIVEKTLYID SVDVAEFQHP SYSDTKELMD
601: TAGLDFGTLV ERRGIEEASS AESSFQDIRC LNISKGGILK LKAPGSVDSL PSSSDIPHIN SQEDTLDSFR LDQGLDQEFR SLEFSKGPID GNLSMNNEQI
701: LKADDQVDSN VTFLQSPVPP ALPKSPSESW LWRTVSLQKP HQRSKFHPRK QAPKTSSTDT KWETIVKTSK LHYDHVRYSE ELIAHVPQLP KT

Best Arabidopsis Sequence Match ( AT1G29240.1 )
(BLAST)

001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT

Arabidopsis Description

F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.