CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92401
CDY08148
CDY14873
CDY32954
CDY43608
CDY56353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18630.1	CDY08148	AT3G49580.1	21798944
AT4G18630.1	CDX92401	AT5G21274.1	17360592
AT4G18630.1	CDY14873	AT5G43320.1	21798944
AT4G18630.1	CDY32954	AT5G43320.1	21798944
AT4G18630.1	CDY43608	AT5G43320.1	21798944
AT4G18630.1	CDY56353	AT5G43320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53997	Canola	plastid	77.13	81.71
CDX78880	Canola	nucleus	76.46	71.49
CDX99449	Canola	nucleus	74.22	70.13
AT4G18630.1	Thale cress	nucleus	73.99	68.89
CDY06031	Canola	nucleus	33.18	33.87
CDX87761	Canola	nucleus	31.84	32.79
CDX90178	Canola	nucleus	28.03	24.56
CDY43328	Canola	nucleus	27.13	23.68
CDY15640	Canola	mitochondrion, nucleus, plastid	23.99	23.46
CDX94655	Canola	mitochondrion	25.11	23.05
CDY17227	Canola	nucleus	22.65	20.61
CDY63140	Canola	nucleus	22.42	20.45
CDY10767	Canola	nucleus	18.61	19.48
CDY58982	Canola	nucleus	22.42	18.69
CDY52694	Canola	nucleus	19.51	18.51
CDX97772	Canola	extracellular, vacuole	21.3	16.99
KRH58978	Soybean	nucleus	25.34	16.89
KRH42875	Soybean	nucleus	25.11	16.59
GSMUA_Achr1P04800_001	Banana	nucleus	19.28	16.51
KRH11026	Soybean	nucleus	24.89	16.4
GSMUA_Achr9P06400_001	Banana	nucleus	23.54	15.79
PGSC0003DMT400026504	Potato	nucleus	23.99	15.42
GSMUA_Achr6P26820_001	Banana	nucleus	22.65	15.4
Solyc02g076680.2.1	Tomato	nucleus	23.99	15.4
TraesCS3D01G295500.1	Wheat	nucleus	21.52	14.18
VIT_10s0003g01370.t01	Wine grape	plastid	24.89	14.02
EES01501	Sorghum	nucleus	21.52	13.95
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	21.97	13.74
Zm00001d043395_P002	Maize	nucleus	20.85	13.68
TraesCS3A01G306400.2	Wheat	nucleus	21.52	13.64
Os01t0758900-01	Rice	nucleus	20.85	13.64
KRH21261	Soybean	cytosol, mitochondrion, plastid	11.66	13.13

Protein Annotations

EnsemblPlants:CDY01559	EnsemblPlantsGene:GSBRNA2T00112595001	InterPro:DUF688	PANTHER:PTHR33671	PANTHER:PTHR33671:SF3	PFAM:PF05097
ProteinID:CDY01559	ProteinID:CDY01559.1	SEG:seg	UniParc:UPI0004EEAB4E	MapMan:35.2	:

Description

BnaC07g35490D

Coordinates

chrLK031927:+:597320..599143

Molecular Weight (calculated)

50615.4 Da

IEP (calculated)

8.075

GRAVY (calculated)

-0.835

Length

446 amino acids

Sequence
(BLAST)

001: MEGRKLNLYS PLPSIRRISS KTKHSSESDN KTTVITRPER RSCLRIEQET PVSVLPDQSF DHLSEPASVP FMWEQTPGKP KDNMTTLIQE SGLLETDDEE
101: EEEDLYTGSS DGTFSVNCST SGVSEIEKNV EKADDASSRE SLDQMMARFL PAAKAMAFTH QKRSSEQKQT LQNREALAIR QRSQSLYDDL NIDDDDDEDD
201: EYDVDHRIYP EVTIKKACGF LPRLCAKNSF KISNPVPLVS GSNRGLYHSC EQTGLPNLST RRLSGFISPY RTSCSAPEKP ESFKRLNRGI SKSQELYTPR
301: TRRESLPNHS HSGEVRMFRN SISTPSRIQG TTIHDTRFLA EEVIRRRRSS NRSGNLLKTW PECTAAISTP PLPETPTRPW LRRTLLPPVS PRPYGVVLGQ
401: VGAKKLSQEI LESTKWETMV KTSYVHNDHV RYSQELTVHP SRQKIT

Best Arabidopsis Sequence Match ( AT4G18630.1 )
(BLAST)

001: MEGKKLNLYA PLPSIRRIPS MIERSSELEN KKTTITRPEL RSCPSTKQET PVFVLPDQSF DHLTEPASIP FMWEQIPGKP KDDMATLIQE SGLLETDDEE
101: EDEVDEDLDT VSSNVSFSVN CSTSGVSEIE KTGERSDCDE KSRESLDLMM SRFLPAAKAM ALQTHQKHQS SYNSSEQKLI TQNREALVAR QRSQLVAEHE
201: HFAIVQSLYD DLNIDDDTED DENDDDGDDY GHVDHKIYPA EVTKKACGFL PRLCAKNSFK FLNPVPLDSV SNRSMKHSGD QTSLPNWSTR RLSGFISPYR
301: TSCSDSGFLG TPEKPESFKR LNRGISKSQE LYPTRTRREV LPNYSNSGEI KMFRNSISTP SRIQRTTIHD SRFLVEEVNR RRNNKSGNLQ QTSSEYTPAL
401: SPPPLPETPS RSWLGRTLLP PVNPRPYGVV LGQVGIKKLN QEVLESTKWE TIVKTSYVHN DHARYSQELI VYPSRQQNT

Arabidopsis Description

Uncharacterized protein At4g18630 [Source:UniProtKB/TrEMBL;Acc:Q8GYP4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.